Evidence map›Paper›PMID 25114278›Full record

ArticleGenetics2014

Genetic regulation of Zfp30, CXCL1, and neutrophilic inflammation in murine lung.

Holly Rutledge, David L Aylor, Danielle E Carpenter, Bailey C Peck, Peter Chines, Lawrence E Ostrowski, Elissa J Chesler, Gary A Churchill, Fernando Pardo-Manuel de Villena, Samir N P Kelada

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Baseline and innate immune response characterization of a Zfp30 knockout mouse strain.Mammalian genome : official journal of the International Mammalian Genome Society · 2020
    Article
  7. A comprehensive and comparative phenotypic analysis of the collaborative founder strains identifies new and known phenotypes.Mammalian genome : official journal of the International Mammalian Genome Society · 2020
    Article
  8. Article
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  11. Article
  12. Article
  13. Article
  14. Review
  15. Of mice and men: the host response to influenza virus infection.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Article
  16. Animal models of endocrine disruption.Best practice & research. Clinical endocrinology & metabolism · 2018
    Review
  17. Differential Regulation ofG3 (Bethesda, Md.) · 2018
    Article
  18. Article
  19. Identification ofGenetics · 2017
    Article
  20. Genetic determinants of susceptibility to silver nanoparticle-induced acute lung inflammation in mice.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Holly RutledgeDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599.
David L AylorDepartment of Biology, North Carolina State University, Raleigh, North Carolina 27695.
Danielle E CarpenterNational Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892.
Bailey C PeckNational Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892.
Peter ChinesNational Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892.
Lawrence E OstrowskiMarsico Lung Institute, University of North Carolina, Chapel Hill, North Carolina 27599.
Elissa J CheslerThe Jackson Laboratory, Bar Harbor, Maine 04609.
Gary A ChurchillThe Jackson Laboratory, Bar Harbor, Maine 04609.
Fernando Pardo-Manuel de VillenaDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599 Department of Biology, North Carolina State University, Raleigh, North Carolina 27695.
Samir N P KeladaDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599 Marsico Lung Institute, University of North Carolina, Chapel Hill, North Carolina 27599 samir_kelada@med.unc.edu.
University of North Carolina at Chapel Hill · USNational Human Genome Research Institute · USJackson Laboratory · USNorth Carolina State University · US

Funding

UNC and PERLEGEN, IncP50GM076468 · NIGMS · JACKSON LABORATORY · PI PETKOV, PETKO M · 2006 to 2015
$31.0M
UNC Neuroscience Center Research Cores: MicroscopyP30NS045892 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ZYLKA, MARK J. · 2003 to 2022
$11.5M
Systems Genetic Analysis of Multi-parent CrossesR01GM070683 · NIGMS · JACKSON LABORATORY · PI BROMAN, KARL W, CHURCHILL, GARY A · 2004 to 2022
$6.8M
Modeling heterogeneity for safe cancer prevention and detectionU01CA105417 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI THREADGILL, DAVID W. · 2004 to 2013
$6.7M
Systems Genetics Resource ConsortiumU01CA134240 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI THREADGILL, DAVID W. · 2007 to 2011
$5.4M
Gene-environment interactions in asthma in mice and humansZIAHG200361 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI COLLINS, FRANCIS S. · 2009 to 2012
$2.3M
Epigenetics, environmental exposure, and reproduction in the Collaborative CrossK99ES021535 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AYLOR, DAVID LAWRENCE · 2012 to 2013
$176k
System Genetics of Male Infertility in the Collaborative CrossF32GM090667 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AYLOR, DAVID LAWRENCE · 2010 to 2011
$96k
Intramural NIH HHS ZIA HG200361NCI NIH HHS U01 CA105417NCI NIH HHS U01CA105417NCI NIH HHS U01 CA134240NCI NIH HHS U01CA134240NIEHS NIH HHS K99 ES021535NIEHS NIH HHS K99ES021535NIGMS NIH HHS F32 GM090667NIGMS NIH HHS F32GM090667NIGMS NIH HHS GM070683NIGMS NIH HHS GM076468NIGMS NIH HHS P50 GM076468NIGMS NIH HHS R01 GM070683NINDS NIH HHS P30 NS045892NINDS NIH HHS P30NS045892
6 · The paper itself

Abstract

Allergic asthma is a complex disease characterized in part by granulocytic inflammation of the airways. In addition to eosinophils, neutrophils (PMN) are also present, particularly in cases of severe asthma. We sought to identify the genetic determinants of neutrophilic inflammation in a mouse model of house dust mite (HDM)-induced asthma. We applied an HDM model of allergic asthma to the eight founder strains of the Collaborative Cross (CC) and 151 incipient lines of the CC (preCC). Lung lavage fluid was analyzed for PMN count and the concentration of CXCL1, a hallmark PMN chemokine. PMN and CXCL1 were strongly correlated in preCC mice. We used quantitative trait locus (QTL) mapping to identify three variants affecting PMN, one of which colocalized with a QTL for CXCL1 on chromosome (Chr) 7. We used lung eQTL data to implicate a variant in the gene Zfp30 in the CXCL1/PMN response. This genetic variant regulates both CXCL1 and PMN by altering Zfp30 expression, and we model the relationships between the QTL and these three endophenotypes. We show that Zfp30 is expressed in airway epithelia in the normal mouse lung and that altering Zfp30 expression in vitro affects CXCL1 responses to an immune stimulus. Our results provide strong evidence that Zfp30 is a novel regulator of neutrophilic airway inflammation.

Indexed as

AnimalsChemokine CXCL1DNA-Binding ProteinsGene ExpressionGene Expression RegulationLungMaleMice, TransgenicNeutrophil InfiltrationPneumoniaQuantitative Trait LociTracheaTranscription FactorsChemokine CXCL1Cxcl1 protein, mouseDNA-Binding ProteinsTranscription FactorsZfp30 protein, mouseasthmacomplex traitsCXCL1expression quantitative trait locus (eQTL)MPPMultiparent Advanced Generation Inter-Cross (MAGIC)multiparental populationsneutrophilsystems genetics

Identifiers

PMID25114278
PMCPMC4196624
OpenAlexW2158726740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.