Evidence map›Paper›PMID 25114226›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

MRI-localized biopsies reveal subtype-specific differences in molecular and cellular composition at the margins of glioblastoma.

Brian J Gill, David J Pisapia, Hani R Malone, Hannah Goldstein, Liang Lei, Adam Sonabend, Jonathan Yun, Jorge Samanamud, Jennifer S Sims, Matei Banu and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 204 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
204citing papers in PubMed, 1 pooled it
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

204 citing papers in PubMed, 1 synthesis or guideline pooled it, 303 citations in OpenAlex.

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  16. mInternational journal of molecular sciences · 2026
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144 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Brian J GillDepartments of Neurological Surgery.
David J PisapiaPathology and Cell Biology.
Hani R MaloneDepartments of Neurological Surgery.
Hannah GoldsteinDepartments of Neurological Surgery.
Liang LeiPathology and Cell Biology.
Adam SonabendDepartments of Neurological Surgery.
Jonathan YunDepartments of Neurological Surgery.
Jorge SamanamudDepartments of Neurological Surgery.
Jennifer S SimsDepartments of Neurological Surgery.
Matei BanuDepartments of Neurological Surgery.
Athanassios DovasPathology and Cell Biology.
Andrew F TeichPathology and Cell Biology.
Sameer A ShethDepartments of Neurological Surgery.
Guy M McKhannDepartments of Neurological Surgery.
Michael B SistiDepartments of Neurological Surgery.
Jeffrey N BruceDepartments of Neurological Surgery, pc561@columbia.edu jnb2@columbia.edu pas2182@columbia.edu.
Peter A SimsSystems Biology, and Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, NY 10032 pc561@columbia.edu jnb2@columbia.edu pas2182@columbia.edu.
Peter CanollPathology and Cell Biology, pc561@columbia.edu jnb2@columbia.edu pas2182@columbia.edu.
Neurological Surgery · USColumbia University Irving Medical Center · US

Funding

The Role of White Matter Progenitors in Glioma Formation and ProgressionR01NS066955 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CANOLL, PETER · 2010 to 2014
$1.7M
A Microfluidic System for Image-Guided RNA-Seq of Single Cells in GlioblastomaK01EB016071 · NIBIB · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SIMS, PETER ALAN · 2012 to 2016
$863k
NIBIB NIH HHS 1K01EB016071NIBIB NIH HHS K01 EB016071NINDS NIH HHS 1R01NS066955NINDS NIH HHS R01 NS066955
6 · The paper itself

Abstract

Glioblastomas (GBMs) diffusely infiltrate the brain, making complete removal by surgical resection impossible. The mixture of neoplastic and nonneoplastic cells that remain after surgery form the biological context for adjuvant therapeutic intervention and recurrence. We performed RNA-sequencing (RNA-seq) and histological analysis on radiographically guided biopsies taken from different regions of GBM and showed that the tissue contained within the contrast-enhancing (CE) core of tumors have different cellular and molecular compositions compared with tissue from the nonenhancing (NE) margins of tumors. Comparisons with the The Cancer Genome Atlas dataset showed that the samples from CE regions resembled the proneural, classical, or mesenchymal subtypes of GBM, whereas the samples from the NE regions predominantly resembled the neural subtype. Computational deconvolution of the RNA-seq data revealed that contributions from nonneoplastic brain cells significantly influence the expression pattern in the NE samples. Gene ontology analysis showed that the cell type-specific expression patterns were functionally distinct and highly enriched in genes associated with the corresponding cell phenotypes. Comparing the RNA-seq data from the GBM samples to that of nonneoplastic brain revealed that the differentially expressed genes are distributed across multiple cell types. Notably, the patterns of cell type-specific alterations varied between the different GBM subtypes: the NE regions of proneural tumors were enriched in oligodendrocyte progenitor genes, whereas the NE regions of mesenchymal GBM were enriched in astrocytic and microglial genes. These subtype-specific patterns provide new insights into molecular and cellular composition of the infiltrative margins of GBM.

Indexed as

AdultAgedAged, 80 and overBrain NeoplasmsContrast MediaFemaleGlioblastomaHumansImage-Guided BiopsyMagnetic Resonance ImagingMaleMiddle AgedRNA, NeoplasmSequence Analysis, RNATranscriptomeTumor MicroenvironmentContrast MediaRNA, Neoplasmgliomamicroenvironmenttumor heterogeneity

Identifiers

PMID25114226
PMCPMC4151734
OpenAlexW2123040085

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.