Evidence map›Paper›PMID 25113059›Full record

ArticleMolecular oncology2014

Whole genome RNAi screens reveal a critical role of REV3 in coping with replication stress.

Ilya N Kotov, Ellen Siebring-van Olst, Philip A Knobel, Ida H van der Meulen-Muileman, Emanuela Felley-Bosco, Victor W van Beusechem, Egbert F Smit, Rolf A Stahel, Thomas M Marti

Open access · bronzeAbstract read
In one paragraph

Article in Molecular oncology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Ilya N KotovClinic of Oncology, University Hospital Zurich, 8044 Zurich, Switzerland.
Ellen Siebring-van OlstDepartment of Pulmonary Diseases, VU University Medical Center, 1081 HV Amsterdam, The Netherlands.
Philip A KnobelClinic of Oncology, University Hospital Zurich, 8044 Zurich, Switzerland.
Ida H van der Meulen-MuilemanDepartment of Medical Oncology, VU University Medical Center, 1081 HV Amsterdam, The Netherlands.
Emanuela Felley-BoscoClinic of Oncology, University Hospital Zurich, 8044 Zurich, Switzerland.
Victor W van BeusechemDepartment of Medical Oncology, VU University Medical Center, 1081 HV Amsterdam, The Netherlands.
Egbert F SmitDepartment of Pulmonary Diseases, VU University Medical Center, 1081 HV Amsterdam, The Netherlands.
Rolf A StahelClinic of Oncology, University Hospital Zurich, 8044 Zurich, Switzerland.
Thomas M MartiClinic of Oncology, University Hospital Zurich, 8044 Zurich, Switzerland. Electronic address: thomas.marti@insel.ch.
Amsterdam UMC Location Vrije Universiteit Amsterdam · NLUniversity Hospital of Zurich · CHUniversity Hospital of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

REV3, the catalytic subunit of translesion polymerase zeta (polζ), is commonly associated with DNA damage bypass and repair. Despite sharing accessory subunits with replicative polymerase δ, very little is known about the role of polζ in DNA replication. We previously demonstrated that inhibition of REV3 expression induces persistent DNA damage and growth arrest in cancer cells. To reveal determinants of this sensitivity and obtain insights into the cellular function of REV3, we performed whole human genome RNAi library screens aimed at identification of synthetic lethal interactions with REV3 in A549 lung cancer cells. The top confirmed hit was RRM1, the large subunit of ribonucleotide reductase (RNR), a critical enzyme of de novo nucleotide synthesis. Treatment with the RNR-inhibitor hydroxyurea (HU) synergistically increased the fraction of REV3-deficient cells containing single stranded DNA (ssDNA) as indicated by an increase in replication protein A (RPA). However, this increase was not accompanied by accumulation of the DNA damage marker γH2AX suggesting a role of REV3 in counteracting HU-induced replication stress (RS). Consistent with a role of REV3 in DNA replication, increased RPA staining was confined to HU-treated S-phase cells. Additionally, we found genes related to RS to be significantly enriched among the top hits of the synthetic sickness/lethality (SSL) screen further corroborating the importance of REV3 for DNA replication under conditions of RS.

Indexed as

Cell Line, TumorDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA ReplicationFlow CytometryHumansRibonucleoside Diphosphate ReductaseRNA InterferenceTumor Suppressor ProteinsDNA-Binding ProteinsDNA-Directed DNA PolymeraseREV3L protein, humanRibonucleoside Diphosphate ReductaseRRM1 protein, humanTumor Suppressor ProteinsDNA damagePolymerase zetaReplication stressREV3Translesion synthesis

Identifiers

PMID25113059
PMCPMC5528584
OpenAlexW2140883645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.