Evidence map›Paper›PMID 25112689›Full record

ArticleEuropean journal of medicinal chemistry2015

Membrane disruptive antimicrobial activities of human β-defensin-3 analogs.

U S Sudheendra, Vishnu Dhople, Aritreyee Datta, Rajiv K Kar, Charles E Shelburne, Anirban Bhunia, Ayyalusamy Ramamoorthy

Abstract read
In one paragraph

Article in European journal of medicinal chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Antimicrobial peptides as potential therapy for gastrointestinal cancers.Naunyn-Schmiedeberg's archives of pharmacology · 2023
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Frontiers in immunology · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Antiinflammatory peptides: current knowledge and promising prospects.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2019
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

U S SudheendraDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA; Department of Biophysics, University of Michigan, Ann Arbor, MI 48109-1055, USA.
Vishnu DhopleDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA; Department of Biophysics, University of Michigan, Ann Arbor, MI 48109-1055, USA.
Aritreyee DattaDepartment of Biophysics, Bose Institute, P-1/12 CIT Scheme VII (M), Kolkata 700054, India.
Rajiv K KarDepartment of Biophysics, Bose Institute, P-1/12 CIT Scheme VII (M), Kolkata 700054, India.
Charles E ShelburneDepartment of Biologic and Materials Sciences, University of Michigan, Ann Arbor, MI 48109-1055, USA.
Anirban BhuniaDepartment of Biophysics, Bose Institute, P-1/12 CIT Scheme VII (M), Kolkata 700054, India. Electronic address: bhunia@jcbose.ac.in.
Ayyalusamy RamamoorthyDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA; Department of Biophysics, University of Michigan, Ann Arbor, MI 48109-1055, USA. Electronic address: ramamoor@umich.edu.

Funding

Structure and function of antimicrobial peptidesR01AI054515 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAMAMOORTHY, AYYALUSAMY · 2004 to 2008
$1.3M
Purchase of a 500 MHz Solid State NMR SpectrometerS10RR023597 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAMAMOORTHY, AYYALUSAMY · 2007 to 2007
$500k
NCRR NIH HHS S10 RR023597NIAID NIH HHS AI054515NIAID NIH HHS R01 AI054515
6 · The paper itself

Abstract

Human beta defensin-3 (HβD-3) is a host-defense protein exhibiting antibacterial activity towards both Gram-negative and Gram-positive bacteria. There is considerable interest in the function of this protein due to its increased salt tolerance and activity against Gram-positive Staphylococcus aureus. In this study, analogs of HβD-3 devoid of N and C terminal regions are investigated to determine the influence of specific structural motif on antimicrobial activity and selectivity between Gram-positive and Gram-negative bacteria. Circular dichroism, fluorescence and solid-state NMR experiments have been used to investigate the conformation and mode of action of HβD3 analogs with various model membranes to mimic bacterial inner and outer membranes and also mammalian membranes. Our studies specifically focused on determining four major characteristics: (i) interaction of HβD3 analogs with phospholipid vesicles composed of zwitterionic PC or anionic PE:PG vesicles and LPS; (ii) conformation of HβD3-peptide analogs in the presence of PC or PE:PG vesicles; (iii) ability of HβD3 analogs to permeate phospholipid vesicles composed of PC or PE:PG; and (iv) activities on bacteria cells and erythrocytes. Our results infer that the linear peptide L25P and its cyclic form C25P are more active than L21P and C21P analogs. However, they are less active than the parent peptide, thus pointing towards the importance of the N terminal domain in its biological activity. The variation in the activities of L21P/C21P and L25P/C25P also suggest the importance of the positively charged residues at the C terminus in providing selectivity particularly to Gram-negative bacteria.

Indexed as

Amino Acid SequenceAnimalsAnti-Bacterial Agentsbeta-DefensinsBiological TransportCell MembraneCell Membrane PermeabilityErythrocytesFluoresceinsFluorescent DyesHumansMembranes, ArtificialMicrobial Sensitivity TestsModels, MolecularMolecular Sequence DataPeptides6-carboxyfluoresceinAnti-Bacterial Agentsbeta-DefensinsDEFB103A protein, humanFluoresceinsFluorescent DyesMembranes, ArtificialPeptidesPhosphatidylcholinesphosphatidylethanolaminePhosphatidylethanolaminesPhosphatidylglycerolsAntimicrobial peptideDye leakageFluorescenceHβD3Solid-state NMR

Identifiers

PMID25112689
PMCPMC4310808

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.