Evidence map›Paper›PMID 25112480›Full record

ArticleJournal of bacteriology2014

Functional and structural analysis of HicA3-HicB3, a novel toxin-antitoxin system of Yersinia pestis.

Sabrina Bibi-Triki, Inès Li de la Sierra-Gallay, Noureddine Lazar, Arnaud Leroy, Herman Van Tilbeurgh, Florent Sebbane, Elizabeth Pradel

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  7. Prokaryote toxin-antitoxin modules: Complex regulation of an unclear function.Protein science : a publication of the Protein Society · 2021
    Review
  8. Review
  9. Toxins · 2019
    Article
  10. Article
  11. Review
  12. Article
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  14. Article
  15. HicAB toxin-antitoxin complex from Escherichia coli: expression and crystallization.Acta crystallographica. Section F, Structural biology communications · 2017
    Article
  16. Review
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Sabrina Bibi-TrikiEquipe Peste et Yersinia pestis, INSERM U1019, Lille, France CNRS UMR 8204, Lille, France Institut Pasteur de Lille, Centre d'Infection et d'Immunité, Lille, France Université Lille Nord de France, Lille, France UDSL, Lille, France.
Inès Li de la Sierra-GallayEquipe Fonction et Architecture des Assemblages MacroMoléculaires, IBBMC, Université Paris-Sud, CNRS UMR 8619, Orsay, France.
Noureddine LazarEquipe Fonction et Architecture des Assemblages MacroMoléculaires, IBBMC, Université Paris-Sud, CNRS UMR 8619, Orsay, France.
Arnaud LeroyEA 4529, UFR de Pharmacie, Université Paris-Sud, Châtenay-Malabry, France.
Herman Van TilbeurghEquipe Fonction et Architecture des Assemblages MacroMoléculaires, IBBMC, Université Paris-Sud, CNRS UMR 8619, Orsay, France.
Florent SebbaneEquipe Peste et Yersinia pestis, INSERM U1019, Lille, France CNRS UMR 8204, Lille, France Institut Pasteur de Lille, Centre d'Infection et d'Immunité, Lille, France Université Lille Nord de France, Lille, France UDSL, Lille, France florent.sebbane@inserm.fr elizabeth.pradel@inserm.fr.
Elizabeth PradelEquipe Peste et Yersinia pestis, INSERM U1019, Lille, France CNRS UMR 8204, Lille, France Institut Pasteur de Lille, Centre d'Infection et d'Immunité, Lille, France Université Lille Nord de France, Lille, France UDSL, Lille, France florent.sebbane@inserm.fr elizabeth.pradel@inserm.fr.
Université Paris-Sud · FRUniversité de Lille · FRCentre National de la Recherche Scientifique · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mechanisms involved in the virulence of Yersinia pestis, the plague pathogen, are not fully understood. In previous research, we found that a Y. pestis mutant lacking the HicB3 (YPO3369) putative orphan antitoxin was attenuated for virulence in a murine model of bubonic plague. Toxin-antitoxin systems (TASs) are widespread in prokaryotes. Most bacterial species possess many TASs of several types. In type II TASs, the toxin protein is bound and neutralized by its cognate antitoxin protein in the cytoplasm. Here we identify the hicA3 gene encoding the toxin neutralized by HicB3 and show that HicA3-HicB3 constitutes a new functional type II TAS in Y. pestis. Using biochemical and mutagenesis-based approaches, we demonstrate that the HicA3 toxin is an RNase with a catalytic histidine residue. HicB3 has two functions: it sequesters and neutralizes HicA3 by blocking its active site, and it represses transcription of the hicA3B3 operon. Gel shift assays and reporter fusion experiments indicate that the HicB3 antitoxin binds to two operators in the hicA3B3 promoter region. We solved the X-ray structures of HicB3 and the HicA3-HicB3 complex; thus, we present the first crystal structure of a TA complex from the HicAB family. HicB3 forms a tetramer that can bind two HicA3 toxin molecules. HicA3 is monomeric and folds as a double-stranded-RNA-binding domain. The HicB3 N-terminal domain occludes the HicA3 active site, whereas its C-terminal domain folds as a ribbon-helix-helix DNA-binding motif.

Indexed as

AnimalsAntitoxinsBacterial ProteinsBacterial ToxinsBase CompositionGene Expression Regulation, BacterialMiceModels, MolecularMolecular Sequence DataPlaguePromoter Regions, GeneticProtein ConformationVirulenceYersinia pestisAntitoxinsBacterial ProteinsBacterial Toxins

Identifiers

PMID25112480
PMCPMC4248797
OpenAlexW2042358635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.