Evidence map›Paper›PMID 25112479›Full record

ArticleJournal of bacteriology2014

Competence for genetic transformation in Streptococcus pneumoniae: mutations in σA bypass the comW requirement.

Yanina Tovpeko, Donald A Morrison

Abstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Microbiology spectrum · 2023
    Article
  4. Article
  5. Article
  6. The pneumococcal σThe Journal of biological chemistry · 2019
    Article
  7. Competence inFrontiers in cellular and infection microbiology · 2019
    Review
  8. Article
  9. Dynamic Modeling ofFrontiers in microbiology · 2018
    Article
  10. Kinetics of drug-ribosome interactions defines the cidality of macrolide antibiotics.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yanina TovpekoMolecular, Cell, and Developmental Biology, Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, USA.
Donald A MorrisonMolecular, Cell, and Developmental Biology, Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, USA damorris@uic.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Competence for genetic transformation in the genus Streptococcus depends on an alternative sigma factor, σ(X), for coordinated synthesis of 23 proteins, which together establish the X state by permitting lysis of incompetent streptococci, uptake of DNA fragments, and integration of strands of that DNA into the resident genome. Initiation of transient accumulation of high levels of σ(X) is coordinated between cells by transcription factors linked to peptide pheromone signals. In Streptococcus pneumoniae, elevated σ(X) is insufficient for development of full competence without coexpression of a second competence-specific protein, ComW. ComW, shared by eight species in the Streptococcus mitis and Streptococcus anginosus groups, is regulated by the same pheromone circuit that controls σ(X), but its role in expression of the σ(X) regulon is unknown. Using the strong, but not absolute, dependence of transformation on comW as a selective tool, we collected 27 independent comW bypass mutations and mapped them to 10 single-base transitions, all within rpoD, encoding the primary sigma factor subunit of RNA polymerase, σ(A). Eight mapped to sites in rpoD region 4 that are implicated in interaction with the core β subunit, indicating that ComW may act to facilitate competition of the alternative sigma factor σ(X) for access to core polymerase.

Indexed as

Transformation, GeneticAmino Acid SequenceBacterial ProteinsDNA, BacterialGene Expression Regulation, BacterialModels, MolecularMolecular Sequence DataMutationProtein ConformationSigma FactorStreptococcus pneumoniaeBacterial Proteinscompetence factor, StreptococcusDNA, BacterialSigma Factor

Identifiers

PMID25112479
PMCPMC4248798

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.