Evidence map›Paper›PMID 25111513›Full record

ArticleBone marrow transplantation2014

BAT2 and BAT3 polymorphisms as novel genetic risk factors for rejection after HLA-related SCT.

Ignazio Stefano Piras, Andrea Angius, Marco Andreani, Manuela Testi, Guido Lucarelli, Matteo Floris, Sarah Marktel, Fabio Ciceri, Giorgio La Nasa, Katharina Fleischhauer and 4 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Bone marrow transplantation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. The roles of cytosolic quality control proteins, SGTA and the BAG6 complex, in disease.Advances in protein chemistry and structural biology · 2019
    Review
  4. Article
4 · The record

Corrections and comments

  • Erratum issued
    Nasa, G La [corrected to La Nasa, G]
5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Ignazio Stefano PirasCrs4, Biomedicine, Pula (CA), Italy.
Andrea AngiusCrs4, Biomedicine, Pula (CA), Italy.
Marco AndreaniLaboratory of Immunogenetics and Transplant Biology, IME Foundation, Polyclinic of Tor Vergata University, Rome, Italy.
Manuela TestiLaboratory of Immunogenetics and Transplant Biology, IME Foundation, Polyclinic of Tor Vergata University, Rome, Italy.
Guido LucarelliInternational Center for Transplantation in Thalassemia and Sickle Cell Anemia, IME Foundation, Polyclinic of Tor Vergata University, Rome, Italy.
Matteo FlorisCrs4, Biomedicine, Pula (CA), Italy.
Sarah MarktelPediatric Immuno-Hematology Unit and Bone Marrow Transplantation Unit, Division of Regenerative Medicine, Stem Cells and Gene Therapy, Ospedale San Raffaele IRCCS, Milan.
Fabio CiceriPediatric Immuno-Hematology Unit and Bone Marrow Transplantation Unit, Division of Regenerative Medicine, Stem Cells and Gene Therapy, Ospedale San Raffaele IRCCS, Milan.
Giorgio La NasaCentro Trapianti di Midollo Osseo, P.O. "R. Binaghi", Cagliari, Italy.
Katharina FleischhauerUnit of Molecular and Functional Immunogenetics, Division of Regenerative Medicine, Stem Cells and Gene Therapy, San Raffaele Scientific Institute, Milan, Italy.
Maria Grazia RoncaroloSan Raffaele Telethon Institute for Gene Therapy (HSRTIGET), Division of Regenerative Medicine, Stem Cells, and Gene Therapy, San Raffaele Scientific Institute, Milan, Italy.
Alessandro BulfoneCrs4, Biomedicine, Pula (CA), Italy.
Silvia Gregori *San Raffaele Telethon Institute for Gene Therapy (HSRTIGET), Division of Regenerative Medicine, Stem Cells, and Gene Therapy, San Raffaele Scientific Institute, Milan, Italy.
Rosa Bacchetta *San Raffaele Telethon Institute for Gene Therapy (HSRTIGET), Division of Regenerative Medicine, Stem Cells, and Gene Therapy, San Raffaele Scientific Institute, Milan, Italy.
Cluster in Biomedicine · ITPoliclinico Tor Vergata · ITIRCCS Ospedale San Raffaele · ITIstituto di Ricovero e Cura a Carattere Scientifico San RaffaeleThe San Raffaele Telethon Institute for Gene Therapy · ITUniversity of Cagliari · IT

Funding

Telethon GGP08201Telethon TGT06A03Telethon TGT11E02
6 · The paper itself

Abstract

The genetic background of donor and recipient is an important factor determining the outcome of allogeneic hematopoietic SCT (allo-HSCT). We applied whole-genome analysis to investigate genetic variants-other than HLA class I and II-associated with negative outcome after HLA-identical sibling allo-HSCT in a cohort of 110 β-Thalassemic patients. We identified two single-nucleotide polymorphisms (SNPs) in BAT2 (A/G) and BAT3 (T/C) genes, SNP rs11538264 and SNP rs10484558, both located in the HLA class III region, in strong linkage disequilibrium between each other (R(2)=0.92). When considered as single SNP, none of them reached a significant association with graft rejection (nominal P<0.00001 for BAT2 SNP rs11538264, and P<0.0001 for BAT3 SNP rs10484558), whereas the BAT2/BAT3 A/C haplotype was present at significantly higher frequency in patients who rejected as compared to those with functional graft (30.0% vs 2.6%, nominal P=1.15 × 10(-8); and adjusted P=0.0071). The BAT2/BAT3 polymorphisms and specifically the A/C haplotype may represent a novel immunogenetic factor associated with graft rejection in patients undergoing allo-HSCT.

Indexed as

beta-ThalassemiaHematopoietic Stem Cell TransplantationPolymorphism, Single NucleotideAdolescentAdultAllograftsChildChild, PreschoolFemaleGenome-Wide Association StudyGraft RejectionHLA AntigensHumansMaleMolecular ChaperonesProteinsBAG6 protein, humanHLA AntigensMolecular ChaperonesProteinsPRRC2A protein, human

Identifiers

PMID25111513
PMCPMC4222814
OpenAlexW2003064976

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.