ArticleF1000Research2013
C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison.
Article in F1000Research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Decoding the Genome of the Komagataella phaffii Type Strain CBS 2612.Yeast (Chichester, England) · 2025Article
- SARS-CoV-2 Alchemy: Understanding the dynamics of age, vaccination, and geography in the evolution of SARS-CoV-2 in India.PLoS neglected tropical diseases · 2025Article
- A unique symbiosome in an anaerobic single-celled eukaryote.Nature communications · 2024Article
- Chromosomal gene order defines several structural classes of Staphylococcus epidermidis genomes.PloS one · 2024Article
- Comparative genomic analysis ofFrontiers in microbiology · 2024Article
- Genome Mining and Screening for Secondary Metabolite Production in the Endophytic FungusMicroorganisms · 2023Article
- Hologenome analysis reveals independent evolution to chemosymbiosis by deep-sea bivalves.BMC biology · 2023Article
- Complete genome sequence of the kiwifruit bacterial canker pathogen Pseudomonas savastanoi strain MHT1.BMC microbiology · 2022Article
- Complete Genome Sequence Analysis ofFrontiers in microbiology · 2022Article
- Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ.Nature communications · 2020Article
- Nosocomial outbreak of COVID-19 pneumonia in Wuhan, China.The European respiratory journal · 2020Article
- Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species.BMC genomics · 2020Article
- Mitochondrial proline catabolism activates Ras1/cAMP/PKA-induced filamentation in Candida albicans.PLoS genetics · 2019Article
- Sequence analysis of pooled bacterial samples enables identification of strain variation in group A streptococcus.Scientific reports · 2017Article
- Synteny Portal: a web-based application portal for synteny block analysis.Nucleic acids research · 2016Article
- Overcoming Enterotoxigenic Escherichia coli Pathogen Diversity: Translational Molecular Approaches to Inform Vaccine Design.Methods in molecular biology (Clifton, N.J.) · 2016Article
- VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity.BioMed research international · 2016Article
- Draft Genome Sequences of Two Clinical Isolates of Mycobacterium tuberculosis from Sputum of Kazakh Patients.Genome announcements · 2015Article
- Phylogeny Inference of Closely Related Bacterial Genomes: Combining the Features of Both Overlapping Genes and Collinear Genomic Regions.Evolutionary bioinformatics online · 2015Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We present C-Sibelia, a highly accurate and easy-to-use software tool for comparing two closely related bacterial genomes, which can be presented as either finished sequences or fragmented assemblies. C-Sibelia takes as input two FASTA files and produces: (1) a VCF file containing all identified single nucleotide variations and indels; (2) an XMFA file containing alignment information. The software also produces Circos diagrams visualizing high level genomic architecture for rearrangement analyses. C-Sibelia is a part of the Sibelia comparative genomics suite, which is freely available under the GNU GPL v.2 license at http://sourceforge.net/projects/sibelia-bio. C-Sibelia is compatible with Unix-like operating systems. A web-based version of the software is available at http://etool.me/software/csibelia.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.