Evidence map›Paper›PMID 25110525›Full record

ArticleCellular and molecular bioengineering2014

Mathematical modeling of the dynamic mechanical behavior of neighboring sarcomeres in actin stress fibers.

L M Chapin, L T Edgar, E Blankman, M C Beckerle, Y T Shiu

Abstract read
In one paragraph

Article in Cellular and molecular bioengineering, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

L M ChapinHuntsman Cancer Institute, University of Utah ; Department of Oncological Sciences, University of Utah.
L T EdgarDepartment of Bioengineering, University of Utah ; Scientific Computing and Imaging Institute, University of Utah.
E BlankmanHuntsman Cancer Institute, University of Utah ; Department of Oncological Sciences, University of Utah.
M C BeckerleHuntsman Cancer Institute, University of Utah ; Department of Biology, University of Utah ; Department of Oncological Sciences, University of Utah.
Y T ShiuDepartment of Medicine, Division of Nephrology, University of Utah.
University of Utah · USHuntsman Cancer Institute · US

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
PREVENTION OF HEMODIALYSIS VASCULAR ACCESS STENOSISR01HL067646 · NHLBI · UNIVERSITY OF UTAH · PI CHEUNG, ALFRED K · 2002 to 2010
$8.0M
Structure and function of stress fibers and cell adhesion sitesR01GM050877 · NIGMS · UNIVERSITY OF UTAH · PI BECKERLE, MARY C. · 1994 to 2020
$7.8M
Hemodynamics and Vascular Wall Biology Determine Arteriovenous Fistula MaturationR01DK088777 · NIDDK · UNIVERSITY OF UTAH · PI BERCELI, SCOTT A, CHEUNG, ALFRED K · 2011 to 2014
$2.6M
NCI NIH HHS P30 CA042014NHLBI NIH HHS R01 HL067646NIDDK NIH HHS R01 DK088777NIGMS NIH HHS R01 GM050877
6 · The paper itself

Abstract

Actin stress fibers (SFs) in live cells consist of series of dynamic individual sarcomeric units. Within a group of consecutive SF sarcomeres, individual sarcomeres can spontaneously shorten or lengthen without changing the overall length of this group, but the underlying mechanism is unclear. We used a computational model to test our hypothesis that this dynamic behavior is inherent to the heterogeneous mechanical properties of the sarcomeres and the cytoplasmic viscosity. Each sarcomere was modeled as a discrete element consisting of an elastic spring, a viscous dashpot and an active contractile unit all connected in parallel, and experiences forces as a result of actin filament elastic stiffness, myosin II contractility, internal viscoelasticity, or cytoplasmic drag. When all four types of forces are considered, the simulated dynamic behavior closely resembles the experimental observations, which include a low-frequency fluctuation in individual sarcomere length and compensatory lengthening and shortening of adjacent sarcomeres. Our results suggest that heterogeneous stiffness and viscoelasticity of actin fibers, heterogeneous myosin II contractility, and the cytoplasmic drag are sufficient to cause spontaneous fluctuations in SF sarcomere length. Our results shed new light to the dynamic behavior of SF and help design experiments to further our understanding of SF dynamics.

Indexed as

Actin cytoskeletonsarcomeresstress fibers

Identifiers

PMID25110525
PMCPMC4125130
OpenAlexW2039054134

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.