ArticleExtremophiles : life under extreme conditions2014
Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria.
Article in Extremophiles : life under extreme conditions, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 25 citations in OpenAlex.
- Biochemical Characterization of Multimodular Xylanolytic Carbohydrate Esterases from the Marine Bacterium Flavimarina sp. Hel_I_48.Chembiochem : a European journal of chemical biology · 2025Article
- Genomic diversity of phages infecting the globally widespread genus Sulfurimonas.Communications biology · 2024Article
- Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments.Nature communications · 2024Article
- A multi-omic screening approach for the discovery of thermoactive glycoside hydrolases.Extremophiles : life under extreme conditions · 2021Article
- Phylogenetic Distribution of Polysaccharide-Degrading Enzymes in Marine Bacteria.Frontiers in microbiology · 2021Article
- The composition of cultivable bacteria, bacterial pollution, and environmental variables of the coastal areas: an example from the Southeastern Black Sea, Turkey.Environmental monitoring and assessment · 2020Article
- Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions andApplied and environmental microbiology · 2019Article
- Novel archaeal thermostable cellulases from an oil reservoir metagenome.AMB Express · 2017Article
- Diversity of Microbial Carbohydrate-Active enZYmes (CAZYmes) Associated with Freshwater and Soil Samples from Caatinga Biome.Microbial ecology · 2017Article
- Microbial Diversity in Extreme Marine Habitats and Their Biomolecules.Microorganisms · 2017Review
- Complete genome sequence ofStandards in genomic sciences · 2017Article
- International conference on extremophiles 2014.Extremophiles : life under extreme conditions · 2014Article
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Authors and funding
15 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Subseafloor sediment samples derived from a sediment core of 60 m length were used to enrich psychrophilic aerobic bacteria on cellulose, xylan, chitin, and starch. A variety of species belonging to Alpha- and Gammaproteobacteria and to Flavobacteria were isolated from sediment depths between 12 and 42 mbsf. Metagenomic DNA purified from the pooled enrichments was sequenced and analyzed for phylogenetic composition and presence of genes encoding carbohydrate-active enzymes. More than 200 open reading frames coding for glycoside hydrolases were identified, and more than 60 of them relevant for enzymatic degradation of lignocellulose. Four genes encoding β-glucosidases with less than 52% identities to characterized enzymes were chosen for recombinant expression in Escherichia coli. In addition one endomannanase, two endoxylanases, and three β-xylosidases were produced recombinantly. All genes could be actively expressed. Functional analysis revealed discrepancies and additional variability for the recombinant enzymes as compared to the sequence-based predictions.
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