Evidence map›Paper›PMID 25108218›Full record

ArticleMetabolic engineering2014

Toward aldehyde and alkane production by removing aldehyde reductase activity in Escherichia coli.

Gabriel M Rodriguez, Shota Atsumi

Open access · greenAbstract read
In one paragraph

Article in Metabolic engineering, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 143 citations in OpenAlex.

  1. Chemobiological synthesis of benzene, toluene, ethylbenzene, and xylene from glucose or glycerol.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. Article
  4. EngineeringACS catalysis · 2024
    Article
  5. Production of Fatty Acids and Derivatives Using Cyanobacteria.Advances in biochemical engineering/biotechnology · 2023
    Article
  6. Article
  7. Article
  8. Toward bioproduction of oxo chemicals from CBiotechnology for biofuels and bioproducts · 2022
    Review
  9. Review
  10. Selective biosynthesis of retinol in S. cerevisiae.Bioresources and bioprocessing · 2022
    Article
  11. EngineeredFrontiers in bioengineering and biotechnology · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Production of Aldehydes by Biocatalysis.International journal of molecular sciences · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Gabriel M RodriguezDepartment of Chemistry, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.
Shota AtsumiDepartment of Chemistry, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA. Electronic address: satsumi@ucdavis.edu.
University of California, Davis · US

Funding

Training Program in Biomolecular TechnologyT32GM008799 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEACH, J. KENT · 2002 to 2016
$2.4M
NIGMS NIH HHS T32 GM008799NIGMS NIH HHS T32-GM008799
6 · The paper itself

Abstract

Advances in synthetic biology and metabolic engineering have enabled the construction of novel biological routes to valuable chemicals using suitable microbial hosts. Aldehydes serve as chemical feedstocks in the synthesis of rubbers, plastics, and other larger molecules. Microbial production of alkanes is dependent on the formation of a fatty aldehyde intermediate which is converted to an alkane by an aldehyde deformylating oxygenase (ADO). However, microbial hosts such as Escherichia coli are plagued by many highly active endogenous aldehyde reductases (ALRs) that convert aldehydes to alcohols, which greatly complicates strain engineering for aldehyde and alkane production. It has been shown that the endogenous ALR activity outcompetes the ADO enzyme for fatty aldehyde substrate. The large degree of ALR redundancy coupled with an incomplete database of ALRs represents a significant obstacle in engineering E. coli for either aldehyde or alkane production. In this study, we identified 44 ALR candidates encoded in the E. coli genome using bioinformatics tools, and undertook a comprehensive screening by measuring the ability of these enzymes to produce isobutanol. From the pool of 44 candidates, we found five new ALRs using this screening method (YahK, DkgA, GldA, YbbO, and YghA). Combined deletions of all 13 known ALRs resulted in a 90-99% reduction in endogenous ALR activity for a wide range of aldehyde substrates (C2-C12). Elucidation of the ALRs found in E. coli could guide one in reducing competing alcohol formation during alkane or aldehyde production.

Indexed as

Aldehyde ReductaseAldehydesAlkanesEnzyme ActivationEscherichia coliEscherichia coli ProteinsGene SilencingGenetic EnhancementMetabolic EngineeringSignal TransductionAldehyde ReductaseAldehydesAlkanesEscherichia coli ProteinsAldehydeAlkaneBiofuelMetabolic engineeringSynthetic biology

Identifiers

PMID25108218
PMCPMC4411948
OpenAlexW2091523410

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.