Evidence map›Paper›PMID 25107961›Full record

ArticleApplied and environmental microbiology2014

Transcriptomic responses of Phanerochaete chrysosporium to oak acetonic extracts: focus on a new glutathione transferase.

Anne Thuillier, Kamel Chibani, Gemma Belli, Enrique Herrero, Stéphane Dumarçay, Philippe Gérardin, Annegret Kohler, Aurélie Deroy, Tiphaine Dhalleine, Raphael Bchini and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Metadata Analysis ofInternational journal of biological sciences · 2017
    Article
  11. Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Anne ThuillierUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France.
Kamel ChibaniUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France.
Gemma BelliDepartament de Ciències Mèdiques Bàsiques, Universitat de Lleida, IRB Lleida, Lleida, Spain.
Enrique HerreroDepartament de Ciències Mèdiques Bàsiques, Universitat de Lleida, IRB Lleida, Lleida, Spain.
Stéphane DumarçayUniversité de Lorraine, LERMAB, UMR 1093, Faculté des Sciences et Technologies, Vandoeuvre-lès-Nancy, France.
Philippe GérardinUniversité de Lorraine, LERMAB, UMR 1093, Faculté des Sciences et Technologies, Vandoeuvre-lès-Nancy, France.
Annegret KohlerUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France.
Aurélie DeroyUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France.
Tiphaine DhalleineUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France.
Raphael BchiniUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France.
Jean-Pierre JacquotUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France.
Eric GelhayeUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France.
Mélanie Morel-RouhierUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Champenoux, France INRA, IAM, UMR 1136, Vandoeuvre-les-Nancy, France Melanie.Morel@univ-lorraine.fr.
Interactions Arbres-Microorganismes · FRLaboratoire d'Etude et de Recherche sur le Matériau Bois · FRUniversitat de Lleida · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The first steps of wood degradation by fungi lead to the release of toxic compounds known as extractives. To better understand how lignolytic fungi cope with the toxicity of these molecules, a transcriptomic analysis of Phanerochaete chrysosporium genes was performed in the presence of oak acetonic extracts. It reveals that in complement to the extracellular machinery of degradation, intracellular antioxidant and detoxification systems contribute to the lignolytic capabilities of fungi, presumably by preventing cellular damages and maintaining fungal health. Focusing on these systems, a glutathione transferase (P. chrysosporium GTT2.1 [PcGTT2.1]) has been selected for functional characterization. This enzyme, not characterized so far in basidiomycetes, has been classified first as a GTT2 compared to the Saccharomyces cerevisiae isoform. However, a deeper analysis shows that the GTT2.1 isoform has evolved functionally to reduce lipid peroxidation by recognizing high-molecular-weight peroxides as substrates. Moreover, the GTT2.1 gene has been lost in some non-wood-decay fungi. This example suggests that the intracellular detoxification system evolved concomitantly with the extracellular ligninolytic machinery in relation to the capacity of fungi to degrade wood.

Indexed as

AcetoneEvolution, MolecularGene Expression Regulation, FungalGlutathione TransferaseInactivation, MetabolicIsoenzymesLigninLipid PeroxidationOxidative StressPeroxidesPhanerochaetePlant ExtractsQuercusRecombinant ProteinsSaccharomyces cerevisiaeWoodAcetoneGlutathione TransferaseIsoenzymesLigninlignocellulosePeroxidesPlant ExtractsRecombinant Proteins

Identifiers

PMID25107961
PMCPMC4178660
OpenAlexW2158299974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.