Evidence map›Paper›PMID 25107905›Full record

ArticleThe Journal of biological chemistry2014

IκB kinase β (IKBKB) mutations in lymphomas that constitutively activate canonical nuclear factor κB (NFκB) signaling.

Xin Kai, Vasant Chellappa, Carlos Donado, Deepak Reyon, Yurie Sekigami, Dalya Ataca, Abner Louissaint, Hamid Mattoo, J Keith Joung, Shiv Pillai

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  9. Review
  10. Review
  11. Article
  12. EcSTAT3ic about K63-Linked Ubiquitylation of IKKβ.Cell cycle (Georgetown, Tex.) · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Xin KaiCenter for Cancer Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02129.
Vasant ChellappaCenter for Cancer Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02129.
Carlos DonadoCenter for Cancer Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02129.
Deepak ReyonMolecular Pathology Unit, Massachusetts General Hospital, Boston, Massachusetts 02129, and.
Yurie SekigamiCenter for Cancer Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02129.
Dalya AtacaCenter for Cancer Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02129.
Abner LouissaintDepartment of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114.
Hamid MattooCenter for Cancer Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02129.
J Keith JoungMolecular Pathology Unit, Massachusetts General Hospital, Boston, Massachusetts 02129, and; Department of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114.
Shiv PillaiCenter for Cancer Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02129,. Electronic address: pillai@helix.mgh.harvard.edu.
Massachusetts General Hospital · USCenter for Cancer Research · USHarvard University · US

Funding

Studies on Peripheral B Lymphocyte DevelopmentR01AI064930 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI PILLAI, SHIV SUBRAMANIAM · 2006 to 2016
$3.9M
Advancing stem cell technologies using engineered zinc finger proteinsDP1GM105378 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI JOUNG, J. KEITH · 2012 to 2014
$2.6M
Mutations in the SIAE Gene and Susceptibility to Autoimmune DiseasesR01AI076505 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI PILLAI, SHIV SUBRAMANIAM · 2009 to 2012
$1.8M
Molecular determinants of prognosis in limited-stage follicular lymphomaK23CA184279 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI LOUISSAINT, ABNER · 2014 to 2018
$701k
NCCDPHP CDC HHS DP1 GM105378NCI NIH HHS K23 CA184279NIAID NIH HHS AI 064930NIAID NIH HHS AI 076505NIAID NIH HHS R01 AI064930NIAID NIH HHS R01 AI076505NIGMS NIH HHS DP1 GM105378
6 · The paper itself

Abstract

Somatic mutations altering lysine 171 of the IKBKB gene that encodes (IKKβ), the critical activating kinase in canonical (NFκB) signaling, have been described in splenic marginal zone lymphomas and multiple myeloma. Lysine 171 forms part of a cationic pocket that interacts with the activation loop phosphate in the activated wild type kinase. We show here that K171E IKKβ and K171T IKKβ represent kinases that are constitutively active even in the absence of activation loop phosphorylation. Predictive modeling and biochemical studies establish why mutations in a positively charged residue in the cationic pocket of an activation loop phosphorylation-dependent kinase result in constitutive activation. Transcription activator-like effector nuclease-based knock-in mutagenesis provides evidence from a B lymphoid context that K171E IKKβ contributes to lymphomagenesis.

Indexed as

I-kappa B KinaseLymphomaMutation, MissenseNeoplasm ProteinsNF-kappa BAmino Acid SubstitutionHeLa CellsHumansPhosphorylationSignal TransductionI-kappa B KinaseIKBKB protein, humanNeoplasm ProteinsNF-kappa BI Kappa B Kinase BetaLymphomaMolecular ModelingMutantNF-kappa B (NF-κB)Protein KinaseSerine/Threonine Protein KinaseSignalingTranscription Activator-like Effector Nuclease (TALEN)

Identifiers

PMID25107905
PMCPMC4175336
OpenAlexW2034085982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.