Evidence map›Paper›PMID 25107472›Full record

ArticleThe EMBO journal2014

DNA end recognition by the Mre11 nuclease dimer: insights into resection and repair of damaged DNA.

Sihyun Sung, Fuyang Li, Young Bong Park, Jin Seok Kim, Ae-Kyoung Kim, Ok-Kyu Song, Jiae Kim, Jun Che, Sang Eun Lee, Yunje Cho

Abstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The dynamic nature of the Mre11-Rad50 DNA break repair complex.Progress in biophysics and molecular biology · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Modes of action of the archaeal Mre11/Rad50 DNA-repair complex revealed by fast-scan atomic force microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. Article
  15. Review
  16. Structural basis of homologous recombination.Cellular and molecular life sciences : CMLS · 2020
    Review
  17. Activity and structure ofThe Journal of biological chemistry · 2019
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Sihyun SungDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea.
Fuyang LiDepartment of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA Department of Radiation Oncology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Young Bong ParkDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea.
Jin Seok KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea.
Ae-Kyoung KimPanbionet Corporation, Pohang, South Korea.
Ok-Kyu SongPanbionet Corporation, Pohang, South Korea.
Jiae KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea.
Jun CheDepartment of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA Department of Radiation Oncology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Sang Eun LeeDepartment of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA Department of Radiation Oncology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA lees4@uthscsa.edu yunje@postech.ac.kr.
Yunje ChoDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea lees4@uthscsa.edu yunje@postech.ac.kr.
Pohang University of Science and Technology · KRThe University of Texas Health Science Center at San Antonio · USPohang TechnoPark (South Korea) · KR

Funding

Mechanisms of Error Prone Repair of DNA BreaksR01GM071011 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEE, SANG EUN · 2004 to 2021
$4.5M
NIGMS NIH HHS GM71011NIGMS NIH HHS R01 GM071011
6 · The paper itself

Abstract

The Mre11-Rad50-Nbs1 (MRN) complex plays important roles in sensing DNA damage, as well as in resecting and tethering DNA ends, and thus participates in double-strand break repair. An earlier structure of Mre11 bound to a short duplex DNA molecule suggested that each Mre11 in a dimer recognizes one DNA duplex to bridge two DNA ends at a short distance. Here, we provide an alternative DNA recognition model based on the structures of Methanococcus jannaschii Mre11 (MjMre11) bound to longer DNA molecules, which may more accurately reflect a broken chromosome. An extended stretch of B-form DNA asymmetrically runs across the whole dimer, with each end of this DNA molecule being recognized by an individual Mre11 monomer. DNA binding induces rigid-body rotation of the Mre11 dimer, which could facilitate melting of the DNA end and its juxtaposition to an active site of Mre11. The identified Mre11 interface binding DNA duplex ends is structurally conserved and shown to functionally contribute to efficient resection, non-homologous end joining, and tolerance to DNA-damaging agents when other resection enzymes are absent. Together, the structural, biochemical, and genetic findings presented here offer new insights into how Mre11 recognizes damaged DNA and facilitates DNA repair.

Indexed as

DNA Breaks, Double-StrandedDNA End-Joining RepairModels, MolecularAmino Acid SequenceArchaeal ProteinsCrystallography, X-RayDimerizationDNA, ArchaealDNA Mutational AnalysisEndodeoxyribonucleasesExodeoxyribonucleasesMethanocaldococcusModels, StructuralMolecular Sequence DataProtein BindingSequence AlignmentArchaeal ProteinsDNA, ArchaealEndodeoxyribonucleasesExodeoxyribonucleasesMre11 protein, archaealconserved basic regioncrystal structureDNA end recognitionDSB repairMre11‐DNA

Identifiers

PMID25107472
PMCPMC4253529
OpenAlexW2088938499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.