Evidence map›Paper›PMID 25105285›Full record

ArticlePloS one2014

Genomic characterization of a large outbreak of Legionella pneumophila serogroup 1 strains in Quebec City, 2012.

Simon Lévesque, Pier-Luc Plante, Nilmini Mendis, Philippe Cantin, Geneviève Marchand, Hugues Charest, Frédéric Raymond, Caroline Huot, Isabelle Goupil-Sormany, François Desbiens and 3 more

Open access · goldAbstract readHistorical Article
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Rapid adaptations ofMicrobial genomics · 2023
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  6. A Tale of Four Danish Cities:International journal of environmental research and public health · 2022
    Article
  7. Article
  8. Article
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  10. Journal of the Association of Medical Microbiology and Infectious Disease Canada = Journal officiel de l'Association pour la microbiologie medicale et l'infectiologie Canada · 2020
    Article
  11. Pathogen Genomics in Public Health.The New England journal of medicine · 2019
    Article
  12. Article
  13. Epidemiological information is key when interpreting whole genome sequence data - lessons learned from a largeEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2017
    Article
  14. Article
  15. Seeding and Establishment of Legionella pneumophila in Hospitals: Implications for Genomic Investigations of Nosocomial Legionnaires' Disease.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2017
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Simon LévesqueLaboratoire de Santé Publique du Québec (LSPQ)/Institut National de Santé Publique du Québec, Québec, Canada.
Pier-Luc PlanteUniversité Laval, Department of Molecular Medicine, Québec, Canada.
Nilmini MendisDepartment of Natural Resource Sciences, Faculty of Agricultural and Environmental Sciences, McGill University, Québec, Canada.
Philippe CantinCentre d'Expertise en Analyse Environnementale du Québec, Québec, Canada.
Geneviève MarchandInstitut de Recherche Robert-Sauvé en Santé et en Sécurité du Travail, Québec, Canada.
Hugues CharestLaboratoire de Santé Publique du Québec (LSPQ)/Institut National de Santé Publique du Québec, Québec, Canada; Département de Microbiologie, Immunologie et Infectiologie, Université de Montréal, Québec, Canada.
Frédéric RaymondUniversité Laval, Department of Molecular Medicine, Québec, Canada.
Caroline HuotDirection Régionale de Santé Publique de la Capitale-Nationale, Québec, Canada.
Isabelle Goupil-SormanyDirection Régionale de Santé Publique de la Capitale-Nationale, Québec, Canada.
François DesbiensDirection Régionale de Santé Publique de la Capitale-Nationale, Québec, Canada.
Sébastien P FaucherDepartment of Natural Resource Sciences, Faculty of Agricultural and Environmental Sciences, McGill University, Québec, Canada.
Jacques CorbeilUniversité Laval, Department of Molecular Medicine, Québec, Canada.
Cécile TremblayLaboratoire de Santé Publique du Québec (LSPQ)/Institut National de Santé Publique du Québec, Québec, Canada; Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Québec, Canada.
Institut National de Santé Publique du Québec · CAUniversité Laval · CAMcGill University · CACentre Hospitalier de l’Université de Montréal · CAInstitut de Recherche Robert-Sauvé en Santé et en Sécurité du Travail · CAUniversité de Montréal · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the summer of 2012, a major Legionella pneumophila serogroup 1 outbreak occurred in Quebec City, Canada, which caused 182 declared cases of Legionnaire's disease and included 13 fatalities. Legionella pneumophila serogroup 1 isolates from 23 patients as well as from 32 cooling towers located in the vicinity of the outbreak were recovered for analysis. In addition, 6 isolates from the 1996 Quebec City outbreak and 4 isolates from patients unrelated to both outbreaks were added to allow comparison. We characterized the isolates using pulsed-field gel electrophoresis, sequence-based typing, and whole genome sequencing. The comparison of patients-isolated strains to cooling tower isolates allowed the identification of the tower that was the source of the outbreak. Legionella pneumophila strain Quebec 2012 was identified as a ST-62 by sequence-based typing methodology. Two new Legionellaceae plasmids were found only in the epidemic strain. The LVH type IV secretion system was found in the 2012 outbreak isolates but not in the ones from the 1996 outbreak and only in half of the contemporary human isolates. The epidemic strains replicated more efficiently and were more cytotoxic to human macrophages than the environmental strains tested. At least four Icm/Dot effectors in the epidemic strains were absent in the environmental strains suggesting that some effectors could impact the intracellular replication in human macrophages. Sequence-based typing and pulsed-field gel electrophoresis combined with whole genome sequencing allowed the identification and the analysis of the causative strain including its likely environmental source.

Indexed as

Disease OutbreaksPhylogenyBase SequenceBiofilmsCluster AnalysisComputational BiologyElectrophoresis, Gel, Pulsed-FieldGenome, BacterialHistory, 21st CenturyHumansLegionella pneumophilaLegionnaires' DiseaseMolecular Sequence DataQuebecSequence Analysis, DNAStatistics, Nonparametric

Identifiers

PMID25105285
PMCPMC4126679
OpenAlexW2064143767

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.