Evidence map›Paper›PMID 25105228›Full record

ArticleAmerican journal of human genetics2014

Exome sequencing identifies a recurrent de novo ZSWIM6 mutation associated with acromelic frontonasal dysostosis.

Joshua D Smith, Anne V Hing, Christine M Clarke, Nathan M Johnson, Francisco A Perez, Sarah S Park, Jeremy A Horst, Brig Mecham, Lisa Maves, Deborah A Nickerson and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 72 citations in OpenAlex.

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  18. Genetics of the patella.European journal of human genetics : EJHG · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Joshua D SmithDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Anne V HingCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98195, USA; Craniofacial Center, Seattle Children's Hospital, Seattle, WA 98105, USA.
Christine M ClarkeCraniofacial Center, Seattle Children's Hospital, Seattle, WA 98105, USA.
Nathan M JohnsonCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Francisco A PerezDepartment of Radiology, UW Medicine, Seattle, WA 98195, USA.
Sarah S ParkCraniofacial Center, Seattle Children's Hospital, Seattle, WA 98105, USA.
Jeremy A HorstDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.
Brig MechamTrialomics, Seattle, WA 98101, USA.
Lisa MavesCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
University of Washington Center for Mendelian Genomics
Michael L CunninghamCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98195, USA; Craniofacial Center, Seattle Children's Hospital, Seattle, WA 98105, USA. Electronic address: michael.cunningham@seattlechildrens.org.
Seattle Children's Hospital · USUniversity of Washington · USSeattle Reproductive Medicine · USUniversity of California, San Francisco · US

Funding

UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Next Generation Mendelian GeneticsRC2HG005608 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2009 to 2010
$3.9M
Ethical and Social Issues in the Study of Genetics of Complex TraitsR00HG004316 · NHGRI · SEATTLE CHILDREN'S HOSPITAL · PI TABOR, HOLLY K · 2008 to 2010
$722k
Ethical and Social Issues in the Study of Genetics of Complex TraitsK99HG004316 · NHGRI · STANFORD UNIVERSITY · PI TABOR, HOLLY K · 2007 to 2007
$85k
NHGRI NIH HHS 1RC2HG005608NHGRI NIH HHS 1U54HG006493NHGRI NIH HHS 5R000HG004316NHGRI NIH HHS R00 HG004316NHGRI NIH HHS RC2 HG005608NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493
6 · The paper itself

Abstract

Acromelic frontonasal dysostosis (AFND) is a rare disorder characterized by distinct craniofacial, brain, and limb malformations, including frontonasal dysplasia, interhemispheric lipoma, agenesis of the corpus callosum, tibial hemimelia, preaxial polydactyly of the feet, and intellectual disability. Exome sequencing of one trio and two unrelated probands revealed the same heterozygous variant (c.3487C>T [p. Arg1163Trp]) in a highly conserved protein domain of ZSWIM6; this variant has not been seen in the 1000 Genomes data, dbSNP, or the Exome Sequencing Project. Sanger validation of the three trios confirmed that the variant was de novo and was also present in a fourth isolated proband. In situ hybridization of early zebrafish embryos at 24 hr postfertilization (hpf) demonstrated telencephalic expression of zswim6 and onset of midbrain, hindbrain, and retinal expression at 48 hpf. Immunohistochemistry of later-stage mouse embryos demonstrated tissue-specific expression in the derivatives of all three germ layers. qRT-PCR expression analysis of osteoblast and fibroblast cell lines available from two probands was suggestive of Hedgehog pathway activation, indicating that the ZSWIM6 mutation associated with AFND may lead to the craniofacial, brain and limb malformations through the disruption of Hedgehog signaling.

Indexed as

Abnormalities, MultipleAmino Acid SequenceAnimalsBase SequenceCraniofacial AbnormalitiesDNA-Binding ProteinsDNA Mutational AnalysisExomeFaceHedgehog ProteinsHumansIntellectual DisabilityLimb Deformities, CongenitalMandibulofacial DysostosisMiceMolecular Sequence DataDNA-Binding ProteinsHedgehog ProteinsZSWIM6 protein, human

Identifiers

PMID25105228
PMCPMC4129399
OpenAlexW1998890935

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.