Evidence map›Paper›PMID 25105065›Full record

ArticleCurrent protocols in mouse biology2013

Establishment of Gastrointestinal Epithelial Organoids.

Maxime M Mahe, Eitaro Aihara, Michael A Schumacher, Yana Zavros, Marshall H Montrose, Michael A Helmrath, Toshiro Sato, Noah F Shroyer

Open access · greenAbstract read
In one paragraph

Article in Current protocols in mouse biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 192 papers.

0numbers the graph read from it
0cells of the map it votes in
192citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

192 citing papers in PubMed, 321 citations in OpenAlex.

  1. Article
  2. Article
  3. Altered GScience advances · 2026
    Article
  4. Article
  5. Review
  6. Microorganisms · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Microorganisms · 2025
    Article
  11. Article
  12. Tet1 safeguards lineage allocation in intestinal stem cells.bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Necrotizing enterocolitis causes increased ileal goblet cell loss inbioRxiv : the preprint server for biology · 2025
    Article
  16. A critical review onFrontiers in cellular and infection microbiology · 2025
    Review
  17. Live-Cell Calcium Imaging in 3D Intestinal Organoids.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  18. Article
  19. Article
  20. Review

132 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Maxime M MaheDivision of Pediatric Surgery, Cincinnati Children's Hospital Medical Research Center, Cincinnati, Ohio.
Eitaro AiharaDepartment of Molecular and Cellular Physiology, University of Cincinnati, Cincinnati, Ohio.
Michael A SchumacherDepartment of Molecular and Cellular Physiology, University of Cincinnati, Cincinnati, Ohio.
Yana ZavrosDepartment of Molecular and Cellular Physiology, University of Cincinnati, Cincinnati, Ohio.
Marshall H MontroseDepartment of Molecular and Cellular Physiology, University of Cincinnati, Cincinnati, Ohio.
Michael A HelmrathDivision of Pediatric Surgery, Cincinnati Children's Hospital Medical Research Center, Cincinnati, Ohio.
Toshiro SatoDepartment of Gastroenterology, School of Medicine, Keio University, Tokyo, Japan.
Noah F ShroyerDivision of Gastroenterology, Hepatology, and Nutrition, Cincinnati Children's Hospital Medical Research Center, Cincinnati, Ohio.
University of Cincinnati · USCincinnati Children's Hospital Medical Center · USKeio University · JP

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
ROLE OF ANGPTL4, AN ANGIOGENIC MEDIATOR, IN ARTHRITISP30AR047363 · NIAMS · CINCINNATI CHILDRENS HOSP MED CTR · PI WAGNER, MICHAEL · 2001 to 2015
$9.2M
SENSING PH AT THE GASTRIC SURFACER01DK054940 · NIDDK · UNIVERSITY OF CINCINNATI · PI MONTROSE, MARSHALL H · 1999 to 2013
$4.3M
Cincinnati Center for Excellence in Molecular HematologyP30DK090971 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI ZHENG, YI · 2010 to 2015
$4.0M
The role of Hedgehog Signaling in gastric tissue repair and regenerationR01DK083402 · NIDDK · UNIVERSITY OF CINCINNATI · PI ZAVROS, YANA · 2011 to 2019
$3.7M
Human Endocrine Cell DevelopmentR01DK092456 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI WELLS, JAMES M · 2012 to 2016
$2.3M
KLF5 regulation of intestinal development and stem cell homeostasis.R01DK092306 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI SHROYER, NOAH FREEMAN · 2011 to 2014
$1.6M
The role of ATOH1 as a tumor suppressor in colorectal cancerR01CA142826 · NCI · CINCINNATI CHILDRENS HOSP MED CTR · PI SHROYER, NOAH FREEMAN · 2010 to 2014
$1.5M
NCI NIH HHS R01 CA142826NIAMS NIH HHS P30 AR047363NIDDK NIH HHS P30 DK078392NIDDK NIH HHS P30 DK090971NIDDK NIH HHS R01 DK054940NIDDK NIH HHS R01 DK083402NIDDK NIH HHS R01 DK092306NIDDK NIH HHS R01 DK092456
6 · The paper itself

Abstract

The intestinal epithelium constitutes a system of constant and rapid renewal triggered by proliferation of intestinal stem cells (ISCs), and is an ideal system for studying cell proliferation, migration, and differentiation. Primary cell cultures have proven to be promising for unraveling the mechanisms involved in epithelium homeostasis. In 2009, Sato et al. established a long-term primary culture to generate epithelial organoids (enteroids) with crypt- and villus-like epithelial domains representing the complete census of progenitors and differentiated cells. Similarly, isolated ISCs expressing Lgr5 (leucine-rich repeat-containing G protein-coupled receptor) can generate enteroids. Here, we describe methods to establish gastric, small intestinal, and colonic epithelial organoids and generate Lgr5(+ve) single cell-derived epithelial organoids. We also describe the imaging techniques used to characterize those organoids. This in vitro model constitutes a powerful tool for studying stem cell biology and intestinal epithelial cell physiology throughout the digestive tract. Curr. Protoc. Mouse Biol. 3:217-240 © 2013 by John Wiley & Sons, Inc.

Indexed as

3-dimensional cell culturegastrointestinal stem cellsimagingLgr5 cell sortingorganoids

Identifiers

PMID25105065
PMCPMC4120977
OpenAlexW1519585418

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.