Evidence map›Paper›PMID 25105057›Full record

ArticleBacteriophage2014

Flap endonuclease of bacteriophage T7: Possible roles in RNA primer removal, recombination and host DNA breakdown.

Hitoshi Mitsunobu, Bin Zhu, Seung-Joo Lee, Stanley Tabor, Charles C Richardson

Abstract read
In one paragraph

Article in Bacteriophage, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. BioprospectingViruses · 2020
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hitoshi MitsunobuThe Department of Biological Chemistry and Molecular Pharmacology; Harvard Medical School; Boston, MA USA.
Bin ZhuThe Department of Biological Chemistry and Molecular Pharmacology; Harvard Medical School; Boston, MA USA.
Seung-Joo LeeThe Department of Biological Chemistry and Molecular Pharmacology; Harvard Medical School; Boston, MA USA.
Stanley TaborThe Department of Biological Chemistry and Molecular Pharmacology; Harvard Medical School; Boston, MA USA.
Charles C RichardsonThe Department of Biological Chemistry and Molecular Pharmacology; Harvard Medical School; Boston, MA USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene 6 protein of bacteriophage T7 has 5'-3'-exonuclease activity specific for duplex DNA. We have found that gene 6 protein also has flap endonuclease activity. The flap endonuclease activity is considerably weaker than the exonuclease activity. Unlike the human homolog of gene 6 protein, the flap endonuclease activity of gene 6 protein is dependent on the length of the 5'-flap. This dependency of activity on the length of the 5'-flap may result from the structured helical gateway region of gene 6 protein which differs from that of human flap endonuclease 1. The flap endonuclease activity provides a mechanism by which RNA-terminated Okazaki fragments, displaced by the lagging strand DNA polymerase, are processed. 3'-extensions generated during degradation of duplex DNA by the exonuclease activity of gene 6 protein are inhibitory to further degradation of the 5'-terminus by the exonuclease activity of gene 6 protein. The single-stranded DNA binding protein of T7 overcomes this inhibition.

Indexed as

bacteriophage T7DNA replicationflap endonucleasegene 6 proteinOkazaki fragment

Identifiers

PMID25105057
PMCPMC4124056

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.