Evidence map›Paper›PMID 25103242›Full record

ArticleMolecular biology of the cell2014

Actin cable distribution and dynamics arising from cross-linking, motor pulling, and filament turnover.

Haosu Tang, Damien Laporte, Dimitrios Vavylonis

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

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  8. Multiscale model of integrin adhesion assembly.PLoS computational biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Haosu TangDepartment of Physics, Lehigh University, Bethlehem, PA 18015.
Damien LaporteInstitut de Biochimie et Génétique Cellulaires, Université de Bordeaux, 33077 Bordeaux, France.
Dimitrios VavylonisDepartment of Physics, Lehigh University, Bethlehem, PA 18015 vavylonis@lehigh.edu.
Lehigh University · USUniversité de Bordeaux · FR

Funding

Modeling and analysis of actin filament organization in yeastR01GM098430 · NIGMS · LEHIGH UNIVERSITY · PI VAVYLONIS, DIMITRIOS · 2012 to 2016
$1.3M
NIGMS NIH HHS R01 GM098430NIGMS NIH HHS R01GM098430
6 · The paper itself

Abstract

The growth of fission yeast relies on the polymerization of actin filaments nucleated by formin For3p, which localizes at tip cortical sites. These actin filaments bundle to form actin cables that span the cell and guide the movement of vesicles toward the cell tips. A big challenge is to develop a quantitative understanding of these cellular actin structures. We used computer simulations to study the spatial and dynamical properties of actin cables. We simulated individual actin filaments as semiflexible polymers in three dimensions composed of beads connected with springs. Polymerization out of For3p cortical sites, bundling by cross-linkers, pulling by type V myosin, and severing by cofilin are simulated as growth, cross-linking, pulling, and turnover of the semiflexible polymers. With the foregoing mechanisms, the model generates actin cable structures and dynamics similar to those observed in live-cell experiments. Our simulations reproduce the particular actin cable structures in myoVΔ cells and predict the effect of increased myosin V pulling. Increasing cross-linking parameters generates thicker actin cables. It also leads to antiparallel and parallel phases with straight or curved cables, consistent with observations of cells overexpressing α-actinin. Finally, the model predicts that clustering of formins at cell tips promotes actin cable formation.

Indexed as

Molecular Dynamics SimulationActin CytoskeletonActin Depolymerizing FactorsActininCell Cycle ProteinsForminsMyosin Type VSchizosaccharomycesSchizosaccharomyces pombe ProteinsActin Depolymerizing FactorsActininCell Cycle ProteinsFOR3 protein, S pombeForminsMyosin Type VSchizosaccharomyces pombe Proteins

Identifiers

PMID25103242
PMCPMC4230589
OpenAlexW1992045321

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.