Evidence map›Paper›PMID 25102091›Full record

ArticleAIDS (London, England)2014

Novel tetra-peptide insertion in Gag-p6 ALIX-binding motif in HIV-1 subtype C associated with protease inhibitor failure in Indian patients.

Ujjwal Neogi, Shwetha D Rao, Irene Bontell, Jens Verheyen, Vasudev R Rao, Sagar C Gore, Neelesh Soni, Anita Shet, Eugen Schülter, Maria L Ekstrand and 5 more

Open access · greenAbstract read
In one paragraph

Article in AIDS (London, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. HIV-1Viruses · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 6 countries.

Ujjwal NeogiaDivision of Clinical Microbiology, Department of Laboratory Medicine, Karolinska Institutet, Stockholm, Sweden bDivision of Public Health and Infection, St. John's Research Institute, Bangalore India cUnit of Infectious Diseases, Department of Medicine Huddinge, Karolinska Institutet, Stockholm, Sweden dInstitute of Virology, University-Hospital, University Duisburg-Essen, Essen, Germany eDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, USA fIndian Institute of Science Education and Research, Pune, Maharashtra, India gInstitute of Virology, University of Cologne, Cologne, Germany hDepartment of Medicine, University of California, San Francisco, California, USA iDepartment of Medicine, Faculty of Medicine, Addis Ababa University, Addis Ababa, Ethiopia jBioinformatics Institute kDepartment of Biological Sciences, National University of Singapore, Singapore.
Shwetha D Rao
Irene Bontell
Jens Verheyen
Vasudev R Rao
Sagar C Gore
Neelesh Soni
Anita Shet
Eugen Schülter
Maria L Ekstrand
Amogne Wondwossen
Rolf Kaiser
Mallur S Madhusudhan
Vinayaka R Prasad
Anders Sonnerborg
Indian Institute of Science Education and Research Pune · INAlbert Einstein College of Medicine · USKarolinska Institutet · SEUniversity of Cologne · DEAddis Ababa University · ETGTx (United States) · USUniversity of California, San Francisco · USUniversity of Duisburg-Essen · DE

Funding

Ujima Mentoring ProgramP30MH062246 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Sheri Ann Lippman · 2001 to 2026
$57.4M
The role of viral and cellular proteins in early events of HIV-1 replicationR37AI030861 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI PRASAD, VINAYAKA R. · 2007 to 2016
$4.4M
INTERNATIONAL TRAINING IN AIDS/TB PREVENTION RESEARCHD43TW001403 · FIC · YESHIVA UNIVERSITY · PI PRASAD, VINAYAKA R. · 2000 to 2011
$3.8M
Dissecting the Role of HIV-1 Tat & Chemokine Axis in Subtype-Specificity of HADR01MH083579 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI PRASAD, VINAYAKA R. · 2008 to 2012
$2.9M
Examining ART Adherence Issues in Bangalore IndiaR01MH067513 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EKSTRAND, MARIA L. · 2003 to 2010
$2.9M
FIC NIH HHS D43 TW001403NIAID NIH HHS R37 AI030861NIMH NIH HHS 1R01MH083579NIMH NIH HHS P30 MH062246NIMH NIH HHS R01 MH067513NIMH NIH HHS R01MH067513NIMH NIH HHS R01 MH083579Wellcome Trust
6 · The paper itself

Abstract

A novel tetra-peptide insertion was identified in Gag-p6 ALIX-binding region, which appeared in protease inhibitor failure Indian HIV-1C sequences (odds ratio=17.1, P < 0.001) but was naturally present in half of untreated Ethiopian HIV-1C sequences. The insertion is predicted to restore ALIX-mediated virus release pathway, which is lacking in HIV-1C. The clinical importance of the insertion needs to be evaluated in HIV-1C dominating regions wherein the use of protease inhibitor drugs are being scaled up.

Indexed as

Drug Resistance, ViralMutagenesis, InsertionalAdultCohort StudiesFemalegag Gene Products, Human Immunodeficiency VirusGenotypeHIV-1HIV InfectionsHIV Protease InhibitorsHumansIndiaMaleMiddle AgedTreatment Failuregag Gene Products, Human Immunodeficiency VirusHIV Protease Inhibitorsp6 gag protein, Human immunodeficiency virus 1

Identifiers

PMID25102091
PMCPMC4198440
OpenAlexW2328748498

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.