Evidence map›Paper›PMID 25101797›Full record

ArticleGenes and immunity2014

Common distal elements orchestrate CIITA isoform-specific expression in multiple cell types.

S Lohsen, P Majumder, C D Scharer, B G Barwick, J W Austin, W M Zinzow-Kramer, J M Boss

Open access · greenAbstract read
In one paragraph

Article in Genes and immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. H3K27me3 Demethylase UTX Restrains Plasma Cell Formation.Journal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Macrophage-specific MHCII expression is regulated by a remoteThe Journal of experimental medicine · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

S LohsenDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
P MajumderDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
C D ScharerDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
B G BarwickDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
J W AustinDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
W M Zinzow-KramerDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
J M BossDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
Emory University · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
Regulation of MHC Class II GenesR01GM047310 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2015
$4.6M
MHC Class II Transactivator Function and RegulationR01AI034000 · NIAID · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2009
$2.6M
Regulation of the MHC Class II Transactivator CIITAR56AI034000 · NIAID · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 2010 to 2010
$383k
Epigenetic Programming of B cell Terminal DifferentiationF31AI112261 · NIAID · EMORY UNIVERSITY · PI BARWICK, BENJAMIN GABRIEL · 2014 to 2016
$120k
NIAID NIH HHS F31 AI112261NIAID NIH HHS R01 AI034000NIAID NIH HHS R56 AI034000NIGMS NIH HHS R01 GM047310NIGMS NIH HHS R01GM47310NIGMS NIH HHS T32GM0008490NIGMS NIH HHS T32 GM008490
6 · The paper itself

Abstract

Major histocompatibility class II (MHC-II) expression is critical for immune responses and is controlled by the MHC-II transactivator CIITA. CIITA is primarily regulated at the transcriptional level and is expressed from three main promoters with myeloid, lymphoid and interferon (IFN)-γ-treated non-hematopoietic cells using promoters pI, pIII and pIV, respectively. Recent studies in non-hematopoietic cells suggest that a series of distal regulatory elements may be involved in regulating CIITA transcription. To identify distal elements in B cells, a DNase I hypersensitivity screen was performed, revealing a series of potential novel regulatory elements. These elements were analyzed computationally and biochemically. Several regions displayed active histone modifications and/or enhanced expression of a reporter gene. Four of the elements interacted with pIII in B cells. These same four regions were also found to interact with pI in splenic dendritic cells (spDC). Intriguingly, examination of the above interactions in pI-knockout-derived spDC showed a switch to the next available promoter, pIII. Extensive DNA methylation was found at the pI region in B cells, suggesting that this promoter is not accessible in B cells. Thus, CIITA expression is likely mediated in hematopoietic cells by common elements with promoter accessibility having a part in promoter choice.

Indexed as

Gene Expression RegulationAnimalsBinding SitesB-LymphocytesCCCTC-Binding FactorCell Line, TumorCells, CulturedDendritic CellsDeoxyribonuclease IDNA MethylationLymphocytesMice, Inbred C57BLMice, KnockoutModels, GeneticMyeloid CellsNuclear ProteinsCCCTC-Binding FactorCtcf protein, mouseDeoxyribonuclease IMHC class II transactivator proteinNuclear ProteinsProtein IsoformsRepressor ProteinsTrans-Activators

Identifiers

PMID25101797
PMCPMC4257854
OpenAlexW1967832594

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.