Evidence map›Paper›PMID 25101778›Full record

ArticlePLoS genetics2014

Response regulator heterodimer formation controls a key stage in Streptomyces development.

Mahmoud M Al-Bassam, Maureen J Bibb, Matthew J Bush, Govind Chandra, Mark J Buttner

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 101 citations in OpenAlex.

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  15. Harnessing regulatory networks in Actinobacteria for natural product discovery.Journal of industrial microbiology & biotechnology · 2024
    Review
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mahmoud M Al-BassamDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, United Kingdom.
Maureen J BibbDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, United Kingdom.
Matthew J BushDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, United Kingdom.
Govind ChandraDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, United Kingdom.
Mark J ButtnerDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, United Kingdom.
John Innes Centre · GBNorwich Research Park · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H006125/1Biotechnology and Biological Sciences Research Council BB/I002197/1Biotechnology and Biological Sciences Research Council BBS/E/J/00000015
6 · The paper itself

Abstract

The orphan, atypical response regulators BldM and WhiI each play critical roles in Streptomyces differentiation. BldM is required for the formation of aerial hyphae, and WhiI is required for the differentiation of these reproductive structures into mature spores. To gain insight into BldM function, we defined the genome-wide BldM regulon using ChIP-Seq and transcriptional profiling. BldM target genes clustered into two groups based on their whi gene dependency. Expression of Group I genes depended on bldM but was independent of all the whi genes, and biochemical experiments showed that Group I promoters were controlled by a BldM homodimer. In contrast, Group II genes were expressed later than Group I genes and their expression depended not only on bldM but also on whiI and whiG (encoding the sigma factor that activates whiI). Additional ChIP-Seq analysis showed that BldM Group II genes were also direct targets of WhiI and that in vivo binding of WhiI to these promoters depended on BldM and vice versa. We go on to demonstrate that BldM and WhiI form a functional heterodimer that controls Group II promoters, serving to integrate signals from two distinct developmental pathways. The BldM-WhiI system thus exemplifies the potential of response regulator heterodimer formation as a mechanism to expand the signaling capabilities of bacterial cells.

Indexed as

Bacterial ProteinsDNA-Binding ProteinsGene Expression Regulation, BacterialHyphaePromoter Regions, GeneticProtein MultimerizationSigma FactorSignal TransductionSpores, BacterialStreptomycesBacterial ProteinsBldM protein, Streptomyces coelicolorDNA-Binding ProteinsSigma FactorwhiG protein, Streptomyces coelicolor

Identifiers

PMID25101778
PMCPMC4125116
OpenAlexW2056240004

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.