Evidence map›Paper›PMID 25101076›Full record

ArticleFrontiers in microbiology2014

Macromolecular networks and intelligence in microorganisms.

Hans V Westerhoff, Aaron N Brooks, Evangelos Simeonidis, Rodolfo García-Contreras, Fei He, Fred C Boogerd, Victoria J Jackson, Valeri Goncharuk, Alexey Kolodkin

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Adaptive behaviour and learning in slime moulds: the role of oscillations.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Article
  10. Review
  11. Self-Cognizant Bionic Liquid Sensor for Pathogen Diagnosis.Cyborg and bionic systems (Washington, D.C.) · 2021
    Article
  12. Plants are intelligent, here's how.Annals of botany · 2020
    Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hans V WesterhoffDepartment of Molecular Cell Physiology, Vrije Universiteit Amsterdam Amsterdam, Netherlands ; Manchester Centre for Integrative Systems Biology, The University of Manchester Manchester, UK ; Synthetic Systems Biology, University of Amsterdam Amsterdam, Netherlands.
Aaron N BrooksInstitute for Systems Biology Seattle, WA, USA ; Molecular and Cellular Biology Program, University of Washington Seattle, WA, USA.
Evangelos SimeonidisInstitute for Systems Biology Seattle, WA, USA ; Luxembourg Centre for Systems Biomedicine, University of Luxembourg Esch-sur-Alzette, Luxembourg.
Rodolfo García-ContrerasDepartamento de Bioquímica, Instituto Nacional de Cardiología Mexico City, Mexico.
Fei HeDepartment of Automatic Control and Systems Engineering, The University of Sheffield Sheffield, UK.
Fred C BoogerdDepartment of Molecular Cell Physiology, Vrije Universiteit Amsterdam Amsterdam, Netherlands.
Victoria J JacksonSchool of Computer Science, The University of Manchester Manchester, UK.
Valeri GoncharukNetherlands Institute for Neuroscience Amsterdam, Netherlands ; Russian Cardiology Research Center Moscow, Russia ; Department of Medicine, Center for Alzheimer and Neurodegenerative Research, University of Alberta Edmonton, AB, Canada.
Alexey KolodkinInstitute for Systems Biology Seattle, WA, USA ; Luxembourg Centre for Systems Biomedicine, University of Luxembourg Esch-sur-Alzette, Luxembourg.

Funding

Biotechnology and Biological Sciences Research Council BB/C008219/1Biotechnology and Biological Sciences Research Council BB/F003528/1Biotechnology and Biological Sciences Research Council BB/I004688/1Biotechnology and Biological Sciences Research Council BB/I004696/1Biotechnology and Biological Sciences Research Council BB/I00470X/1
6 · The paper itself

Abstract

Living organisms persist by virtue of complex interactions among many components organized into dynamic, environment-responsive networks that span multiple scales and dimensions. Biological networks constitute a type of information and communication technology (ICT): they receive information from the outside and inside of cells, integrate and interpret this information, and then activate a response. Biological networks enable molecules within cells, and even cells themselves, to communicate with each other and their environment. We have become accustomed to associating brain activity - particularly activity of the human brain - with a phenomenon we call "intelligence." Yet, four billion years of evolution could have selected networks with topologies and dynamics that confer traits analogous to this intelligence, even though they were outside the intercellular networks of the brain. Here, we explore how macromolecular networks in microbes confer intelligent characteristics, such as memory, anticipation, adaptation and reflection and we review current understanding of how network organization reflects the type of intelligence required for the environments in which they were selected. We propose that, if we were to leave terms such as "human" and "brain" out of the defining features of "intelligence," all forms of life - from microbes to humans - exhibit some or all characteristics consistent with "intelligence." We then review advances in genome-wide data production and analysis, especially in microbes, that provide a lens into microbial intelligence and propose how the insights derived from quantitatively characterizing biomolecular networks may enable synthetic biologists to create intelligent molecular networks for biotechnology, possibly generating new forms of intelligence, first in silico and then in vivo.

Indexed as

anticipationassociationdecision-makingemergencemicrobial intelligenceproblem solvingrobust adaptationself-awareness

Identifiers

PMID25101076
PMCPMC4106424

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.