Evidence map›Paper›PMID 25100322›Full record

ArticleJournal of the Royal Society, Interface2014

Computational modelling of epidermal stratification highlights the importance of asymmetric cell division for predictable and robust layer formation.

Alexander Gord, William R Holmes, Xing Dai, Qing Nie

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mechanisms of Cell Polarization.Current opinion in systems biology · 2017
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Deciphering principles of morphogenesis from temporal and spatial patterns on the integument.Developmental dynamics : an official publication of the American Association of Anatomists · 2015
    Article
  13. Modelling epidermis homoeostasis and psoriasis pathogenesis.Journal of the Royal Society, Interface · 2015
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alexander GordCenter for Mathematical and Computational Biology, Department of Mathematics, University of California, Irvine, CA 92617, USA Center for Complex Biological Systems, University of California, Irvine, CA 92617, USA.
William R HolmesCenter for Mathematical and Computational Biology, Department of Mathematics, University of California, Irvine, CA 92617, USA Center for Complex Biological Systems, University of California, Irvine, CA 92617, USA.
Xing DaiCenter for Complex Biological Systems, University of California, Irvine, CA 92617, USA Department of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92617, USA.
Qing NieCenter for Mathematical and Computational Biology, Department of Mathematics, University of California, Irvine, CA 92617, USA Center for Complex Biological Systems, University of California, Irvine, CA 92617, USA qnie@uci.edu.

Funding

Uncover Strategies Used By Biological SystemsP50GM076516 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2007 to 2016
$25.1M
Stochastic Dynamics and Noise Control in Patterning SystemsR01GM107264 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI NIE, QING, SCHILLING, THOMAS F · 2014 to 2017
$1.3M
NIGMS NIH HHS P50 GM076516NIGMS NIH HHS P50GM76516NIGMS NIH HHS R01 GM107264NIGMS NIH HHS R01GM107264
6 · The paper itself

Abstract

Skin is a complex organ tasked with, among other functions, protecting the body from the outside world. Its outermost protective layer, the epidermis, is comprised of multiple cell layers that are derived from a single-layered ectoderm during development. Using a new stochastic, multi-scale computational modelling framework, the anisotropic subcellular element method, we investigate the role of cell morphology and biophysical cell-cell interactions in the formation of this layered structure. This three-dimensional framework describes interactions between collections of hundreds to thousands of cells and (i) accounts for intracellular structure and morphology, (ii) easily incorporates complex cell-cell interactions and (iii) can be efficiently implemented on parallel architectures. We use this approach to construct a model of the developing epidermis that accounts for the internal polarity of ectodermal cells and their columnar morphology. Using this model, we show that cell detachment, which has been previously suggested to have a role in this process, leads to unpredictable, randomized stratification and that this cannot be abrogated by adjustment of cell-cell adhesion interaction strength. Polarized distribution of cell adhesion proteins, motivated by epithelial polarization, can however eliminate this detachment, and in conjunction with asymmetric cell division lead to robust and predictable development.

Indexed as

Models, BiologicalCell AdhesionCell CommunicationCell DivisionComputational BiologyComputer SimulationEpidermal CellsEpidermisTime Factorsanisotropic subcellular element methodasymmetric divisioncomputational biologyepidermal developmentpolarity

Identifiers

PMID25100322
PMCPMC4233746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.