Evidence map›Paper›PMID 25099812›Full record

ArticleBiophysical journal2014

Single-cell E. coli response to an instantaneously applied chemotactic signal.

Takashi Sagawa, Yu Kikuchi, Yuichi Inoue, Hiroto Takahashi, Takahiro Muraoka, Kazushi Kinbara, Akihiko Ishijima, Hajime Fukuoka

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Slower swimming promotes chemotactic encounters between bacteria and small phytoplankton.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
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  7. Article
  8. Article
  9. Article
  10. Fluorescent bacterial biosensorBiomedical optics express · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Takashi SagawaGraduate School of Life Sciences, Tohoku University, Sendai, Japan.
Yu KikuchiGraduate School of Life Sciences, Tohoku University, Sendai, Japan.
Yuichi InoueGraduate School of Life Sciences, Tohoku University, Sendai, Japan; Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan.
Hiroto TakahashiInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan.
Takahiro MuraokaInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan.
Kazushi KinbaraInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan.
Akihiko IshijimaGraduate School of Life Sciences, Tohoku University, Sendai, Japan; Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan.
Hajime FukuokaGraduate School of Life Sciences, Tohoku University, Sendai, Japan; Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan. Electronic address: f-hajime@tagen.tohoku.ac.jp.
Tohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In response to an attractant or repellant, an Escherichia coli cell controls the rotational direction of its flagellar motor by a chemotaxis system. When an E. coli cell senses an attractant, a reduction in the intracellular concentration of a chemotaxis protein, phosphorylated CheY (CheY-P), induces counterclockwise (CCW) rotation of the flagellar motor, and this cellular response is thought to occur in several hundred milliseconds. Here, to measure the signaling process occurring inside a single E. coli cell, including the recognition of an attractant by a receptor cluster, the inactivation of histidine kinase CheA, and the diffusion of CheY and CheY-P molecules, we applied a serine stimulus by instantaneous photorelease from a caged compound and examined the cellular response at a temporal resolution of several hundred microseconds. We quantified the clockwise (CW) and CCW durations immediately after the photorelease of serine as the response time and the duration of the response, respectively. The results showed that the response time depended on the distance between the receptor and motor, indicating that the decreased CheY-P concentration induced by serine propagates through the cytoplasm from the receptor-kinase cluster toward the motor with a timing that is explained by the diffusion of CheY and CheY-P molecules. The response time included 240 ms for enzymatic reactions in addition to the time required for diffusion of the signaling molecule. The measured response time and duration of the response also revealed that the E. coli cell senses a similar serine concentration regardless of whether the serine concentration is increasing or decreasing. These detailed quantitative findings increase our understanding of the signal transduction process that occurs inside cells during bacterial chemotaxis.

Indexed as

ChemotaxisBacterial ProteinsEscherichia coliEscherichia coli ProteinsHistidine KinaseMembrane ProteinsMethyl-Accepting Chemotaxis ProteinsReaction TimeSerineSingle-Cell AnalysisBacterial ProteinscheA protein, E colicheY protein, E coliEscherichia coli ProteinsHistidine KinaseMembrane ProteinsMethyl-Accepting Chemotaxis ProteinsMotA protein, BacteriaMotB protein, BacteriaSerine

Identifiers

PMID25099812
PMCPMC4129482
OpenAlexW2043305677

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.