Evidence map›Paper›PMID 25098419›Full record

ArticleMolecular genetics and genomics : MGG2014

Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling.

Lopamudra Satapathy, Dharmendra Singh, Prashant Ranjan, Dhananjay Kumar, Manish Kumar, Kumble Vinod Prabhu, Kunal Mukhopadhyay

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Article in Molecular genetics and genomics : MGG, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Genome-Wide Identification and Analysis of WRKY Gene Family inInternational journal of molecular sciences · 2023
    Article
  3. A Group I WRKY Gene,International journal of molecular sciences · 2022
    Article
  4. Review
  5. Article
  6. Article
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  8. Review
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  10. Article
  11. Article
  12. Article
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  15. Article
  16. Article
  17. Abiotic stress miRNomes in the Triticeae.Functional & integrative genomics · 2017
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lopamudra SatapathyDepartment of Bio-Engineering, Birla Institute of Technology, Mesra, Ranchi, 835215, India.
Dharmendra Singh
Prashant Ranjan
Dhananjay Kumar
Manish Kumar
Kumble Vinod Prabhu
Kunal Mukhopadhyay
Birla Institute of Technology, Mesra · INIndian Agricultural Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

WRKY, a plant-specific transcription factor family, has important roles in pathogen defense, abiotic cues and phytohormone signaling, yet little is known about their roles and molecular mechanism of function in response to rust diseases in wheat. We identified 100 TaWRKY sequences using wheat Expressed Sequence Tag database of which 22 WRKY sequences were novel. Identified proteins were characterized based on their zinc finger motifs and phylogenetic analysis clustered them into six clades consisting of class IIc and class III WRKY proteins. Functional annotation revealed major functions in metabolic and cellular processes in control plants; whereas response to stimuli, signaling and defense in pathogen inoculated plants, their major molecular function being binding to DNA. Tag-based expression analysis of the identified genes revealed differential expression between mock and Puccinia triticina inoculated wheat near isogenic lines. Gene expression was also performed with six rust-related microarray experiments at Gene Expression Omnibus database. TaWRKY10, 15, 17 and 56 were common in both tag-based and microarray-based differential expression analysis and could be representing rust specific WRKY genes. The obtained results will bestow insight into the functional characterization of WRKY transcription factors responsive to leaf rust pathogenesis that can be used as candidate genes in molecular breeding programs to improve biotic stress tolerance in wheat.

Indexed as

Chromosomes, PlantGene Expression ProfilingMolecular Sequence AnnotationPhylogenyPlant DiseasesPlant ProteinsTranscription FactorsTriticumPlant ProteinsTranscription Factors

Identifiers

PMID25098419
OpenAlexW1998916444

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.