Evidence map›Paper›PMID 25097467›Full record

ArticleClinical proteomics2014

Proteomic analysis of human vitreous humor.

Krishna R Murthy, Renu Goel, Yashwanth Subbannayya, Harrys Kc Jacob, Praveen R Murthy, Srikanth Srinivas Manda, Arun H Patil, Rakesh Sharma, Nandini A Sahasrabuddhe, Arun Parashar and 5 more

Open access · goldAbstract read
In one paragraph

Article in Clinical proteomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it, 147 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Vitreous proteomics in rhegmatogenous retinal detachment and proliferative vitreoretinopathy.Biomedical papers of the Medical Faculty of the University Palacky, Olomouc, Czechoslovakia · 2025
    Review
  5. Review
  6. Article
  7. Vitreous Fibrillar Structure and Interfibrillar Composition in Adult Mice.Investigative ophthalmology & visual science · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Intrinsic disorder in the human vitreous proteome.International journal of biological macromolecules · 2024
    Article
  13. Vitreous Humor Proteomic Profile in Patients With Vitreoretinal Lymphoma.Investigative ophthalmology & visual science · 2023
    Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Krishna R Murthy *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Renu Goel *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Yashwanth SubbannayyaInstitute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Harrys Kc JacobInstitute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Praveen R MurthyVittala International Institute Of Ophthalmology, Bangalore, Karnataka 560085, India.
Srikanth Srinivas MandaInstitute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Arun H PatilInstitute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Rakesh SharmaDepartment of Neurochemistry, National Institute of Mental Health and Neuro Sciences, Bangalore 560 006, India.
Nandini A SahasrabuddheInstitute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Arun ParasharArmed Forces Medical College, Pune 411 040, India.
Bipin G NairAmrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam, Kerala 690 525, India.
Venkatarangaiah KrishnaDepartment of Biotechnology, Kuvempu University, Shankaraghatta, Karnataka 577 451, India.
Ts Keshava PrasadInstitute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Harsha GowdaInstitute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Akhilesh PandeyDepartment of Biological Chemistry, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore 21205 MD, USA.
Institute of Bioinformatics · INAmrita Vishwa Vidyapeetham · INArmed Forces Medical College · INJohns Hopkins Medicine · USKuvempu University · INNational Institute of Mental Health and Neurosciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe vitreous humor is a transparent, gelatinous mass whose main constituent is water. It plays an important role in providing metabolic nutrient requirements of the lens, coordinating eye growth and providing support to the retina. It is in close proximity to the retina and reflects many of the changes occurring in this tissue. The biochemical changes occurring in the vitreous could provide a better understanding about the pathophysiological processes that occur in vitreoretinopathy. In this study, we investigated the proteome of normal human vitreous humor using high resolution Fourier transform mass spectrometry.

resultsThe vitreous humor was subjected to multiple fractionation techniques followed by LC-MS/MS analysis. We identified 1,205 proteins, 682 of which have not been described previously in the vitreous humor. Most proteins were localized to the extracellular space (24%), cytoplasm (20%) or plasma membrane (14%). Classification based on molecular function showed that 27% had catalytic activity, 10% structural activity, 10% binding activity, 4% cell and 4% transporter activity. Categorization for biological processes showed 28% participate in metabolism, 20% in cell communication and 13% in cell growth. The data have been deposited to the ProteomeXchange with identifier PXD000957.

conclusionThis large catalog of vitreous proteins should facilitate biomedical research into pathological conditions of the eye including diabetic retinopathy, retinal detachment and cataract.

Indexed as

Body fluid proteomicsOFFGEL electrophoresisProtein biomarkersProteome discovererRetinaSCX chromatographySecreted proteins

Identifiers

PMID25097467
PMCPMC4106660
OpenAlexW2164518567

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.