Evidence map›Paper›PMID 25096878›Full record

ArticlemBio2014

Novel entries in a fungal biofilm matrix encyclopedia.

Robert Zarnowski, William M Westler, Ghislain Ade Lacmbouh, Jane M Marita, Jameson R Bothe, Jörg Bernhardt, Anissa Lounes-Hadj Sahraoui, Joël Fontaine, Hiram Sanchez, Ronald D Hatfield and 4 more

Abstract read
In one paragraph

Article in mBio, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 158 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
158citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

158 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Antifungal activity of propolis against Candida spp.New microbes and new infections · 2026
    Review
  4. Antifungal turbinmicin alters functional vesicle cargo.Antimicrobial agents and chemotherapy · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Understanding the Effect of Propolis and Its Derivatives AgainstJournal of fungi (Basel, Switzerland) · 2026
    Review
  9. Profound cell wall remodeling inMicrobiology spectrum · 2026
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Bioactive Constituents ofDrug design, development and therapy · 2026
    Review
  17. OvercomingFrontiers in antibiotics · 2026
    Review
  18. Review
  19. Review
  20. Review

98 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Robert ZarnowskiDepartment of Medicine, Infectious Diseases, University of Wisconsin, Madison, Wisconsin, USA.
William M WestlerNational Magnetic Resonance Facility at Madison, University of Wisconsin, Madison, Wisconsin, USA.
Ghislain Ade LacmbouhDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, USA.
Jane M MaritaDairy Forage Research Center, U.S. Department of Agriculture, Madison, Wisconsin, USA.
Jameson R BotheDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, USA.
Jörg Bernhardt
Anissa Lounes-Hadj SahraouiUniversité du Littoral Côte d'Opale, Unité de Chimie Environnementale at Interactions sur le Vivant, Calais, France.
Joël FontaineUniversité du Littoral Côte d'Opale, Unité de Chimie Environnementale at Interactions sur le Vivant, Calais, France.
Hiram SanchezDepartment of Medicine, Infectious Diseases, University of Wisconsin, Madison, Wisconsin, USA.
Ronald D HatfieldDairy Forage Research Center, U.S. Department of Agriculture, Madison, Wisconsin, USA.
James M Ntambi
Jeniel E Nett
Aaron P MitchellBiological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
David R Andesdra@medicine.wisc.edu.

Funding

ZINC DEFICIENCY &PROTEIN EXPRESSION IN RAT OLFACTORY BULBSP41RR005351 · NCRR · UNIVERSITY OF GEORGIA (UGA) · PI VENOT, ANDRE · 1989 to 2011
$18.4M
WATER DISTRIB:PHYSICAL PROPERT:PIZZA &LMPS MOZZARELLA CHEESES:EARLY STAGE MATURP41RR002301 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 1985 to 2011
$13.0M
RESEARCH TRAINING IN HEMATOLOGYT32HL007899 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Jane Ellen Churpek · 1998 to 2026
$8.2M
Vesicle-mediated drug resistance of Candida albicans biofilmR01AI073289 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI ANDES, DAVID R, MITCHELL, AARON P · 2008 to 2025
$7.9M
GENETIC CONTROL OF C. ALBICANS BIOFILM FORMATIONR01AI067703 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MITCHELL, AARON P · 2006 to 2014
$3.2M
Small Angle X-ray Scattering InstrumentS10RR027000 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI BUTCHER, SAMUEL E · 2011 to 2011
$307k
GENETIC ANALYSIS OF PLANT ORGANELLE TRANSIT SEQUENCESF32GM010399 · NIGMS · ROCKEFELLER UNIVERSITY · PI SZABO, LESLIE J · 1985 to 1985
–
WIDE-BORE 9.4 TESLA NMR SPECTROMETER FOR UW-MADISONS10RR002781 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI MARKLEY, JOHN L · 1986 to 1986
–
CONSOLE UPGRADES FOR NMR FACILITYS10RR008438 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI MARKLEY, JOHN L · 1993 to 1993
–
NCRR NIH HHS P41 RR002301NCRR NIH HHS P41 RR005351NCRR NIH HHS P41RR005351NCRR NIH HHS P41RR02301NCRR NIH HHS S10 RR002781NCRR NIH HHS S10 RR008438NCRR NIH HHS S10 RR027000NCRR NIH HHS S10RR027000NHLBI NIH HHS T32 HL007899NIAID NIH HHS R01 AI067703NIAID NIH HHS R01 AI073289NIGMS NIH HHS P41GM10399
6 · The paper itself

Abstract

Virulence of Candida is linked with its ability to form biofilms. Once established, biofilm infections are nearly impossible to eradicate. Biofilm cells live immersed in a self-produced matrix, a blend of extracellular biopolymers, many of which are uncharacterized. In this study, we provide a comprehensive analysis of the matrix manufactured by Candida albicans both in vitro and in a clinical niche animal model. We further explore the function of matrix components, including the impact on drug resistance. We uncovered components from each of the macromolecular classes (55% protein, 25% carbohydrate, 15% lipid, and 5% nucleic acid) in the C. albicans biofilm matrix. Three individual polysaccharides were identified and were suggested to interact physically. Surprisingly, a previously identified polysaccharide of functional importance, β-1,3-glucan, comprised only a small portion of the total matrix carbohydrate. Newly described, more abundant polysaccharides included α-1,2 branched α-1,6-mannans (87%) associated with unbranched β-1,6-glucans (13%) in an apparent mannan-glucan complex (MGCx). Functional matrix proteomic analysis revealed 458 distinct activities. The matrix lipids consisted of neutral glycerolipids (89.1%), polar glycerolipids (10.4%), and sphingolipids (0.5%). Examination of matrix nucleic acid identified DNA, primarily noncoding sequences. Several of the in vitro matrix components, including proteins and each of the polysaccharides, were also present in the matrix of a clinically relevant in vivo biofilm. Nuclear magnetic resonance (NMR) analysis demonstrated interaction of aggregate matrix with the antifungal fluconazole, consistent with a role in drug impedance and contribution of multiple matrix components. Importance: This report is the first to decipher the complex and unique macromolecular composition of the Candida biofilm matrix, demonstrate the clinical relevance of matrix components, and show that multiple matrix components are needed for protection from antifungal drugs. The availability of these biochemical analyses provides a unique resource for further functional investigation of the biofilm matrix, a defining trait of this lifestyle.

Indexed as

Antifungal AgentsBiofilmsCandida albicansFungal ProteinsGene Expression Regulation, FungalProteomicsAntifungal AgentsFungal Proteins

Identifiers

PMID25096878
PMCPMC4128356

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.