Evidence map›Paper›PMID 25096577›Full record

ArticleThe Journal of biological chemistry2014

Insights into the biosynthesis and assembly of cryptophycean phycobiliproteins.

Kristina E Overkamp, Raphael Gasper, Klaus Kock, Christian Herrmann, Eckhard Hofmann, Nicole Frankenberg-Dinkel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
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  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Crystal structure of the first eukaryotic bilin reductaseThe Journal of biological chemistry · 2019
    Article
  11. Structures and enzymatic mechanisms of phycobiliprotein lyases CpcE/F and PecE/F.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  12. Article
  13. Article
  14. Adaptation to Blue Light in MarineFrontiers in microbiology · 2017
    Article
  15. Review
  16. Structure and mechanism of the phycobiliprotein lyase CpcT.The Journal of biological chemistry · 2014
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kristina E OverkampPhysiology of Microorganisms, Faculty for Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany.
Raphael GasperProtein Crystallography, Faculty for Biology and Biotechnology, and Ruhr University Bochum, 44780 Bochum, Germany.
Klaus KockPhysical Chemistry I, Protein Interactions, Faculty for Chemistry and Biochemistry, Ruhr University Bochum, 44780 Bochum, Germany.
Christian HerrmannPhysical Chemistry I, Protein Interactions, Faculty for Chemistry and Biochemistry, Ruhr University Bochum, 44780 Bochum, Germany.
Eckhard HofmannProtein Crystallography, Faculty for Biology and Biotechnology, and Ruhr University Bochum, 44780 Bochum, Germany.
Nicole Frankenberg-DinkelPhysiology of Microorganisms, Faculty for Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany. Electronic address: nicole.frankenberg@rub.de.
Ruhr University Bochum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phycobiliproteins are employed by cyanobacteria, red algae, glaucophytes, and cryptophytes for light-harvesting and consist of apoproteins covalently associated with open-chain tetrapyrrole chromophores. Although the majority of organisms assemble the individual phycobiliproteins into larger aggregates called phycobilisomes, members of the cryptophytes use a single type of phycobiliprotein that is localized in the thylakoid lumen. The cryptophyte Guillardia theta (Gt) uses phycoerythrin PE545 utilizing the uncommon chromophore 15,16-dihydrobiliverdin (DHBV) in addition to phycoerythrobilin (PEB). Both the biosynthesis and the attachment of chromophores to the apophycobiliprotein have not yet been investigated for cryptophytes. In this study, we identified and characterized enzymes involved in PEB biosynthesis. In addition, we present the first in-depth biochemical characterization of a eukaryotic phycobiliprotein lyase (GtCPES). Plastid-encoded HO (GtHo) was shown to convert heme into biliverdin IXα providing the substrate with a putative nucleus-encoded DHBV:ferredoxin oxidoreductase (GtPEBA). A PEB:ferredoxin oxidoreductase (GtPEBB) was found to convert DHBV to PEB, which is the substrate for the phycobiliprotein lyase GtCPES. The x-ray structure of GtCPES was solved at 2.0 Å revealing a 10-stranded β-barrel with a modified lipocalin fold. GtCPES is an S-type lyase specific for binding of phycobilins with reduced C15=C16 double bonds (DHBV and PEB). Site-directed mutagenesis identified residues Glu-136 and Arg-146 involved in phycobilin binding. Based on the crystal structure, a model for the interaction of GtCPES with the apophycobiliprotein CpeB is proposed and discussed.

Indexed as

Models, MolecularAmino Acid SequenceAmino Acid SubstitutionBiliverdineMolecular Sequence DataMutagenesis, Site-DirectedOxidoreductasesPhycoerythrinPlantsThylakoids15,16-dihydrobiliverdin IXaBiliverdineOxidoreductasesPhycoerythrinAlgaeBilinBiosynthesisChromophoreCrystal StructureLight HarvestingPhotosynthetic PigmentProtein AssemblyTetrapyrrole

Identifiers

PMID25096577
PMCPMC4175312
OpenAlexW2006105120

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.