Evidence map›Paper›PMID 25096075›Full record

ArticleThe Journal of antimicrobial chemotherapy2014

Phenotypic characterization of virological failure following lopinavir/ritonavir monotherapy using full-length Gag-protease genes.

Katherine A Sutherland, Jean L Mbisa, Jade Ghosn, Marie-Laure Chaix, Isabelle Cohen-Codar, Stephane Hue, Jean-Francois Delfraissy, Constance Delaugerre, Ravindra K Gupta

Open access · hybridAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Katherine A SutherlandPublic Health England, London, UK.
Jean L MbisaPublic Health England, London, UK.
Jade GhosnUniversité Paris Descartes, EA 7327, Faculté de Médecine Site Necker, Paris, France APHP, UF de Thérapeutique en Immuno Infectiologie, CHU Hotel Dieu, Paris, France.
Marie-Laure ChaixUniversité Paris Descartes, EA 7327, Faculté de Médecine Site Necker, Paris, France.
Isabelle Cohen-CodarAbbVie Laboratory, Rungis, France.
Stephane HueDivision of Infection and Immunity, University College London, London, UK.
Jean-Francois DelfraissyAP-HP, Department of Internal Medicine, Bicetre University Hospital, Le Kremlin-Bicetre, France.
Constance DelaugerreVirology, U941 INSERM Paris Diderot University, St Louis Hospital-APHP, Paris, France.
Ravindra K GuptaDivision of Infection and Immunity, University College London, London, UK rebmrag@ucl.ac.uk.
Public Health England · GBUniversité Paris Cité · FRUniversity College London · GBAbbott (France) · FRAssistance Publique – Hôpitaux de Paris · FRInserm · FR

Funding

Wellcome Trust
6 · The paper itself

Abstract

objectivesMajor protease mutations are rarely observed following first-line failure with PIs and interpretation of genotyping results in this context may be difficult. We performed extensive phenotyping of viruses from five patients failing lopinavir/ritonavir monotherapy in the MONARK study without major PI mutations by standard genotyping.

methodsPhenotypic susceptibility testing and viral infectivity assessments were performed using a single-cycle assay and fold changes (FC) relative to a lopinavir-susceptible reference strain were calculated.

results>10-fold reduced baseline susceptibility to lopinavir occurred in two of five patients and >5-fold in another two. Four of five patients exhibited phylogenetic evidence of a limited viral evolution between baseline and failure, with amino acid changes at drug resistance-associated positions in one: T81A emerged in Gag with M36I in the protease gene, correlating with a reduction in lopinavir susceptibility from FC 7 (95% CI 6-8.35) to FC 13 (95% CI 8.11-17.8). Reductions in darunavir susceptibility (>5 FC) occurred in three individuals. DISCUSSION: This study suggests both baseline reduced susceptibility and evolution of resistance could be contributing factors to PI failure, despite the absence of classical PI resistance mutations by standard testing methods. Use of phenotyping also reveals lower darunavir susceptibility, warranting further study as this agent is commonly used following lopinavir failure.

Indexed as

Drug Resistance, ViralAnti-HIV Agentsgag Gene Products, Human Immunodeficiency VirusGenotypeHIV InfectionsHIV ProteaseHumansLopinavirMicrobial Sensitivity TestsPhenotypeRitonavirTreatment FailureAnti-HIV Agentsgag Gene Products, Human Immunodeficiency VirusHIV ProteaseLopinavirRitonavirantiretroviral resistanceGagHIVmonotherapyprotease inhibitors

Identifiers

PMID25096075
PMCPMC4228778
OpenAlexW2135149111

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.