Evidence map›Paper›PMID 25095993›Full record

ReviewExperientia supplementum (2012)

Fluorescent methods to study transcription initiation and transition into elongation.

Aishwarya P Deshpande, Shemaila Sultana, Smita S Patel

Abstract readReview
In one paragraph

Review in Experientia supplementum (2012). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Aishwarya P DeshpandeDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, Piscataway, NJ, 08854, USA.
Shemaila Sultana
Smita S Patel
Rutgers, The State University of New Jersey · US

Funding

MECHANISTIC STUDIES OF HEXAMERIC HELICASESR01GM055310 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI PATEL, SMITA S · 1997 to 2015
$4.6M
Mechanism and Regulation of Transcription InitiationR37GM051966 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI PATEL, SMITA S · 2007 to 2015
$3.8M
PRESTEADY STATE KINETIC STUDIES OF TRANSCRIPTIONR01GM051966 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI PATEL, SMITA S · 1995 to 2006
$1.9M
NIGMS NIH HHS GM51966NIGMS NIH HHS GM55310NIGMS NIH HHS R01 GM051966NIGMS NIH HHS R01 GM055310NIGMS NIH HHS R37 GM051966
6 · The paper itself

Abstract

The DNA-dependent RNA polymerases induce specific conformational changes in the promoter DNA during transcription initiation. Fluorescence spectroscopy sensitively monitors these DNA conformational changes in real time and at equilibrium providing powerful ways to estimate interactions in transcriptional complexes and to assess how transcription is regulated by the promoter DNA sequence, transcription factors, and small ligands. Ensemble fluorescence methods described here probe the individual steps of promoter binding, bending, opening, and transition into the elongation using T7 phage and mitochondrial transcriptional systems as examples.

Indexed as

Molecular Probe TechniquesTranscription, GeneticAnimalsBinding SitesDNADNA-Directed RNA PolymerasesFluorescent DyesHumansKineticsNucleic Acid ConformationOptical ImagingPromoter Regions, GeneticSpectrometry, FluorescenceTranscription Elongation, GeneticTranscription Initiation, GeneticDNADNA-Directed RNA PolymerasesFluorescent Dyes

Identifiers

PMID25095993
PMCPMC4430081
OpenAlexW112341609

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.