Evidence map›Paper›PMID 25095880›Full record

ArticleBioinformatics (Oxford, England)2014

AliView: a fast and lightweight alignment viewer and editor for large datasets.

Anders Larsson

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,746 papers.

0numbers the graph read from it
0cells of the map it votes in
1,746citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,746 citing papers in PubMed.

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  14. First Genetic Evidence Confirming the Occurrence of the Siberian ChiffchaffAnimals : an open access journal from MDPI · 2026
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1,686 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Anders LarssonSystematic Biology, Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Uppsala 75236, Sweden.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

summaryAliView is an alignment viewer and editor designed to meet the requirements of next-generation sequencing era phylogenetic datasets. AliView handles alignments of unlimited size in the formats most commonly used, i.e. FASTA, Phylip, Nexus, Clustal and MSF. The intuitive graphical interface makes it easy to inspect, sort, delete, merge and realign sequences as part of the manual filtering process of large datasets. AliView also works as an easy-to-use alignment editor for small as well as large datasets. AVAILABILITY AND IMPLEMENTATION: AliView is released as open-source software under the GNU General Public License, version 3.0 (GPLv3), and is available at GitHub (www.github.com/AliView). The program is cross-platform and extensively tested on Linux, Mac OS X and Windows systems. Downloads and help are available at http://ormbunkar.se/aliview CONTACT: anders.larsson@ebc.uu.se SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Indexed as

PhylogenySoftwareHigh-Throughput Nucleotide SequencingSequence Alignment

Identifiers

PMID25095880
PMCPMC4221126

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.