Evidence map›Paper›PMID 25093829›Full record

ArticlePloS one2014

Functionally significant, rare transcription factor variants in tetralogy of Fallot.

Ana Töpf, Helen R Griffin, Elise Glen, Rachel Soemedi, Danielle L Brown, Darroch Hall, Thahira J Rahman, Jyrki J Eloranta, Christoph Jüngst, A Graham Stuart and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Human Genetics of Tetralogy of Fallot and Double-Outlet Right Ventricle.Advances in experimental medicine and biology · 2024
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Deletion ofCold Spring Harbor molecular case studies · 2021
    Article
  13. In Vivo and In Vitro Genetic Models of Congenital Heart Disease.Cold Spring Harbor perspectives in biology · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Genetic Basis of Human Congenital Heart Disease.Cold Spring Harbor perspectives in biology · 2020
    Article
  18. Article
  19. Article
  20. The genetics of isolated congenital heart disease.American journal of medical genetics. Part C, Seminars in medical genetics · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Ana TöpfInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Helen R GriffinInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Elise GlenInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Rachel SoemediInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Danielle L BrownInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Darroch HallInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Thahira J RahmanInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Jyrki J ElorantaDepartment of Clinical Pharmacology and Toxicology, University Hospital Zurich, Zurich, Switzerland.
Christoph JüngstDepartment of Clinical Pharmacology and Toxicology, University Hospital Zurich, Zurich, Switzerland; Department of Medicine II, Saarland University Medical Center, Homburg, Germany.
A Graham StuartBristol Royal Hospital for Children, Bristol, United Kingdom.
John O'SullivanPaediatric Cardiology, Freeman Hospital Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom.
Bernard D KeavneyInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom; Institute of Cardiovascular Sciences, The University of Manchester, Manchester, United Kingdom.
Judith A GoodshipInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.
Newcastle University · GBUniversity Hospital of Zurich · CHBristol Royal Hospital for Children · GBNewcastle upon Tyne Hospitals NHS Foundation Trust · GBUniversity of Manchester · GB

Funding

British Heart Foundation RG/08/012/25941
6 · The paper itself

Abstract

objectiveRare variants in certain transcription factors involved in cardiac development cause Mendelian forms of congenital heart disease. The purpose of this study was to systematically assess the frequency of rare transcription factor variants in sporadic patients with the cardiac outflow tract malformation tetralogy of Fallot (TOF). METHODS AND

resultsWe sequenced the coding, 5'UTR, and 3'UTR regions of twelve transcription factor genes implicated in cardiac outflow tract development (NKX2.5, GATA4, ISL1, TBX20, MEF2C, BOP/SMYD1, HAND2, FOXC1, FOXC2, FOXH, FOXA2 and TBX1) in 93 non-syndromic, non-Mendelian TOF cases. We also analysed Illumina Human 660W-Quad SNP Array data for copy number variants in these genes; none were detected. Four of the rare variants detected have previously been shown to affect transactivation in in vitro reporter assays: FOXC1 p.P297S, FOXC2 p.Q444R, FOXH1 p.S113T and TBX1 p.P43_G61del PPPPRYDPCAAAAPGAPGP. Two further rare variants, HAND2 p.A25_A26insAA and FOXC1 p.G378_G380delGGG, A488_491delAAAA, affected transactivation in in vitro reporter assays. Each of these six functionally significant variants was present in a single patient in the heterozygous state; each of the four for which parental samples were available were maternally inherited. Thus in the 93 TOF cases we identified six functionally significant mutations in the secondary heart field transcriptional network. SIGNIFICANCE: This study indicates that rare genetic variants in the secondary heart field transcriptional network with functional effects on protein function occur in 3-13% of patients with TOF. This is the first report of a functionally significant HAND2 mutation in a patient with congenital heart disease.

Indexed as

Gene DosageGene Regulatory NetworksGenetic Predisposition to DiseaseHeartHumansMutationRNA SplicingSequence Analysis, DNATetralogy of FallotTranscription FactorsTranscription, GeneticTranscription Factors

Identifiers

PMID25093829
PMCPMC4122343
OpenAlexW2038539437

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.