Evidence map›Paper›PMID 25093676›Full record

ArticleBiochemistry2014

Structures of KcsA in complex with symmetrical quaternary ammonium compounds reveal a hydrophobic binding site.

Michael J Lenaeus, Dylan Burdette, Tobias Wagner, Pamela J Focia, Adrian Gross

Abstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 69 citations in OpenAlex.

  1. Food science & nutrition · 2026
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  8. Neuropharmacological and antiproliferative activity ofSaudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2023
    Article
  9. Heliyon · 2023
    Article
  10. Article
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  12. Biochemical and Pharmacological aspects ofBiochemistry and biophysics reports · 2022
    Article
  13. Article
  14. Mechanism of use-dependent Kv2 channel inhibition by RY785.The Journal of general physiology · 2022
    Article
  15. Deciphering the Pharmacological Potentials of Methanol Extract ofEvidence-based complementary and alternative medicine : eCAM · 2022
    Article
  16. Fenestropathy of Voltage-Gated Sodium Channels.Frontiers in pharmacology · 2022
    Review
  17. Article
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  19. CNS anti-depressant, anxiolytic and analgesic effects ofBiochemistry and biophysics reports · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Michael J LenaeusDepartment of Molecular Pharmacology and Biological Chemistry, Northwestern University Medical School , 303 East Chicago Avenue, Chicago, Illinois 60611, United States.
Dylan Burdette
Tobias Wagner
Pamela J Focia
Adrian Gross
Northwestern University · USRosalind Franklin University of Medicine and Science · US

Funding

TR&D Project 3P41EB001980 · NIBIB · MEDICAL COLLEGE OF WISCONSIN · PI KLUG, CANDICE S · 2003 to 2017
$16.3M
STRUCTURAL STUDIES ON PROKARYOTIC POTASSIUM CHANNELSR01GM058568 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GROSS, ADRIAN · 1999 to 2014
$3.2M
NIBIB NIH HHS P41 EB001980NIGMS NIH HHS GM58568NIGMS NIH HHS R01 GM058568
6 · The paper itself

Abstract

Potassium channels allow for the passive movement of potassium ions across the cell membrane and are instrumental in controlling the membrane potential in all cell types. Quaternary ammonium (QA) compounds block potassium channels and have long been used to study the functional and structural properties of these channels. Here we describe the interaction between three symmetrical hydrophobic QAs and the prokaryotic potassium channel KcsA. The structures demonstrate the presence of a hydrophobic pocket between the inner helices of KcsA and provide insight into the binding site and blocking mechanism of hydrophobic QAs. The structures also reveal a structurally hidden pathway between the central cavity and the outside membrane environment reminiscent of the lateral fenestration observed in sodium channels that can be accessed through small conformational changes in the pore wall. We propose that the hydrophobic binding pocket stabilizes the alkyl chains of long-chain QA molecules and may play a key role in hydrophobic drug binding in general.

Indexed as

Bacterial ProteinsBinding SitesIon Channel GatingModels, MolecularPotassium Channels, Voltage-GatedProtein BindingProtein ConformationQuaternary Ammonium CompoundsBacterial ProteinsKcsA protein, Streptomyces coelicolorPotassium Channels, Voltage-GatedQuaternary Ammonium Compounds

Identifiers

PMID25093676
PMCPMC4139162
OpenAlexW2141196716

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.