Evidence map›Paper›PMID 25093674›Full record

ArticlePloS one2014

High diversity of hepatitis B virus genotypes in Panamanian blood donors: a molecular analysis of new variants.

Alexander A Martínez, Yamitzel Y Zaldivar, CSS-NAT Group, Zoila De Castillo, Alma Y Ortiz, Yaxelis Mendoza, Juan Cristina, Juan M Pascale

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Alexander A MartínezGorgas Memorial Institute for Health Studies, Panama, Panama; Department of Biotechnology, Acharya Nagarjuna University, Guntur, A.P. India; INDICASAT-AIP Clayton, City of Knowledge, Panama.
Yamitzel Y ZaldivarGorgas Memorial Institute for Health Studies, Panama, Panama.
CSS-NAT Group
Zoila De CastilloComplejo Hospitalario Dr. Arnulfo Arias Madrid, Caja de Seguro Social, Panama, Panama.
Alma Y OrtizGorgas Memorial Institute for Health Studies, Panama, Panama.
Yaxelis MendozaGorgas Memorial Institute for Health Studies, Panama, Panama; Department of Biotechnology, Acharya Nagarjuna University, Guntur, A.P. India; INDICASAT-AIP Clayton, City of Knowledge, Panama.
Juan CristinaLaboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay.
Juan M PascaleGorgas Memorial Institute for Health Studies, Panama, Panama.
Instituto Conmemorativo Gorgas de Estudios de la Salud · PAComplejo Hospitalario Dr. Arnulfo Arias Madrid · PAUniversidad de la República de Uruguay · UY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis B Virus (HBV) is an infectious agent that causes more than half of the cases of liver disease and cancer in the world. Globally there are around 250 million people chronically infected with this virus. Despite 16% of the cases of liver disease in Central America are caused by HBV, the information regarding its genetic diversity, genotypes and circulation is scarce. The purpose of this study was to evaluate the genetic variability of the HBV genotypes from HBV-DNA positive samples obtained from screening blood donors at the Social Security System of Panama and to estimate its possible origin. From 59,696 blood donors tested for HBV infection during 2010-2012, there were 74 HBV-DNA positive subjects. Analysis of the partial PreS2-S region of 27 sequences shows that 21% of the infections were caused by genotype A, 3% by genotype D and 76% by genotype F. In addition, we were able to confirm circulation of six sub-genotypes A1, A2, A3, D4, F3, F1 and a proposed new sub-genotype denominated F5pan. We found a confinement of sub-genotypes F1 and F5pan to the western area of Panama. The tMRCA analysis suggests a simultaneous circulation of previously described sub-genotypes rather than recent introductions of the Panamanian sub-genotypes in the country. Moreover, these results highlight the need of more intensive research of the HBV strains circulating in the region at the molecular level. In conclusion, Panama has a high HBV genotype diversity that includes a new proposed sub-genotype, an elevated number of PreCore-Core mutations, and confinement of these variants in a specific geographical location.

Indexed as

Blood DonorsGenetic VariationDNA Mutational AnalysisDNA, ViralGenotypeHepatitis BHepatitis B e AntigensHepatitis B virusHumansMolecular Sequence DataPanamaPhylogenySequence Analysis, DNASeroepidemiologic StudiesDNA, ViralHepatitis B e Antigens

Identifiers

PMID25093674
PMCPMC4122375
OpenAlexW2003056547

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.