Evidence map›Paper›PMID 25091156›Full record

ArticleDNA repair2014

Interplay of DNA damage and cell cycle signaling at the level of human replication protein A.

Gloria E O Borgstahl, Kerry Brader, Adam Mosel, Shengqin Liu, Elisabeth Kremmer, Kaitlin A Goettsch, Carol Kolar, Heinz-Peter Nasheuer, Greg G Oakley

Abstract read
In one paragraph

Article in DNA repair, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Rare Variants in the DNA Repair Pathway and the Risk of Colorectal Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2021
    Article
  9. Article
  10. Replication protein A binds RNA and promotes R-loop formation.The Journal of biological chemistry · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Gloria E O BorgstahlEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, NE 68198, USA. Electronic address: gborgstahl@unmc.edu.
Kerry BraderEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, NE 68198, USA.
Adam MoselDepartment of Oral Biology, University of Nebraska Medical Center, Omaha, NE 68583, USA.
Shengqin LiuDepartment of Oral Biology, University of Nebraska Medical Center, Omaha, NE 68583, USA.
Elisabeth KremmerInstitute for Molecular Immunology, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), 81377 München, Germany.
Kaitlin A GoettschSchool of Interdisciplinary Informatics, College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE 68182, USA.
Carol KolarEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, NE 68198, USA.
Heinz-Peter NasheuerCentre for Chromosome Biology, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.
Greg G OakleyDepartment of Oral Biology, University of Nebraska Medical Center, Omaha, NE 68583, USA.
University of Nebraska Medical Center · USHelmholtz Zentrum München · DENebraska Medical Center · USOllscoil na Gaillimhe – University of Galway · IEUniversity of Nebraska at Omaha · US

Funding

UNMC Structural Biology CoreP20GM103427 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Heather Colleen Jensen-Smith · 2012 to 2026
$59.2M
UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Apar Kishor Ganti · 1985 to 2026
$55.0M
ZINC FINGER-INSPIRED FLUORESCENT CHEMOSENSORSP20RR016469 · NCRR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI TURPEN, JAMES B · 2001 to 2011
$36.2M
Research Pilot Project ProgramP30GM106397 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI JOHNSON, KEITH R · 2013 to 2017
$4.9M
NCI NIH HHS P30 CA036727NCI NIH HHS P30CA036727NCRR NIH HHS 5P20RR016469NCRR NIH HHS P20 RR016469NIGMS NIH HHS 8P20GM103427NIGMS NIH HHS P20 GM103427NIGMS NIH HHS P30 GM106397
6 · The paper itself

Abstract

Replication protein A (RPA) is the main human single-stranded DNA (ssDNA)-binding protein. It is essential for cellular DNA metabolism and has important functions in human cell cycle and DNA damage signaling. RPA is indispensable for accurate homologous recombination (HR)-based DNA double-strand break (DSB) repair and its activity is regulated by phosphorylation and other post-translational modifications. HR occurs only during S and G2 phases of the cell cycle. All three subunits of RPA contain phosphorylation sites but the exact set of HR-relevant phosphorylation sites on RPA is unknown. In this study, a high resolution capillary isoelectric focusing immunoassay, used under native conditions, revealed the isoforms of the RPA heterotrimer in control and damaged cell lysates in G2. Moreover, the phosphorylation sites of chromatin-bound and cytosolic RPA in S and G2 phases were identified by western and IEF analysis with all available phosphospecific antibodies for RPA2. Strikingly, most of the RPA heterotrimers in control G2 cells are phosphorylated with 5 isoforms containing up to 7 phosphates. These isoforms include RPA2 pSer23 and pSer33. DNA damaged cells in G2 had 9 isoforms with up to 14 phosphates. DNA damage isoforms contained pSer4/8, pSer12, pThr21, pSer23, and pSer33 on RPA2 and up to 8 unidentified phosphorylation sites.

Indexed as

DNA DamageG2 PhaseSignal TransductionCell Line, TumorChromatinCytoplasmHumansPhosphorylationProtein IsoformsProtein MultimerizationReplication Protein AChromatinProtein IsoformsReplication Protein ADNA damage responseDNA double-stranded breaksDNA repairG2 phaseHomologous recombinationIsoelectric focusingPhosphorylation

Identifiers

PMID25091156
PMCPMC4122988
OpenAlexW2122423107

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.