Evidence map›Paper›PMID 25090269›Full record

ArticleScientific reports2014

RNA-seq-mediated transcriptome analysis of actively growing and winter dormant shoots identifies non-deciduous habit of evergreen tree tea during winters.

Asosii Paul, Ashwani Jha, Shruti Bhardwaj, Sewa Singh, Ravi Shankar, Sanjay Kumar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 59 citations in OpenAlex.

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  4. Systems scale characterization of circadian rhythm pathway inComputational and structural biotechnology journal · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Asosii Paul1] Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, P.O. Box No. 6, Palampur-176061, Himachal Pradesh, India [2] [3].
Ashwani Jha1] Studio of Computational Biology &Bioinformatics, CSIR-Institute of Himalayan Bioresource Technology, P.O. Box No. 6, Palampur-176061, Himachal Pradesh, India [2].
Shruti BhardwajBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, P.O. Box No. 6, Palampur-176061, Himachal Pradesh, India.
Sewa SinghBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, P.O. Box No. 6, Palampur-176061, Himachal Pradesh, India.
Ravi ShankarStudio of Computational Biology &Bioinformatics, CSIR-Institute of Himalayan Bioresource Technology, P.O. Box No. 6, Palampur-176061, Himachal Pradesh, India.
Sanjay KumarBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, P.O. Box No. 6, Palampur-176061, Himachal Pradesh, India.
Institute of Himalayan Bioresource Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tea [Camellia sinensis (L.) O. Kuntze] is a perennial tree which undergoes winter dormancy and unlike deciduous trees, the species does not shed its leaves during winters. The present work dissected the molecular processes operating in the leaves during the period of active growth and winter dormancy through transcriptome analysis to understand a long-standing question: why should tea be a non-deciduous species? Analyses of 24,700 unigenes obtained from 57,767 primarily assembled transcripts showed (i) operation of mechanisms of winter tolerance, (ii) down-regulation of genes involved in growth, development, protein synthesis and cell division, and (iii) inhibition of leaf abscission due to modulation of senescence related processes during winter dormancy in tea. These senescence related processes exhibited modulation to favour leaf abscission (i) in deciduous Populus tremula during winters, and (ii) also in tea but under osmotic stress during which leaves also abscise. These results validated the relevance of the identified senescence related processes for leaf abscission and suggested their operation when in need in tea.

Indexed as

Gene Expression Regulation, PlantTranscriptomeAgingCamellia sinensisCell DivisionCold TemperatureGene Expression ProfilingHigh-Throughput Nucleotide SequencingPlant LeavesPlant ProteinsPlant ShootsProtein BiosynthesisSeasonsTeaTreesPlant ProteinsTea

Identifiers

PMID25090269
PMCPMC4123203
OpenAlexW1965546414

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.