Evidence map›Paper›PMID 25089116›Full record

ArticleInternational journal of mass spectrometry2013

Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry.

Kevin L Crowell, Erin S Baker, Samuel H Payne, Yehia M Ibrahim, Matthew E Monroe, Gordon W Slysz, Brian L LaMarche, Vladislav A Petyuk, Paul D Piehowski, William F Danielson and 2 more

Abstract read
In one paragraph

Article in International journal of mass spectrometry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Identification of Hip BMD Loss and Fracture Risk Markers Through Population-Based Serum Proteomics.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kevin L CrowellPacific Northwest National Laboratory, Richland, WA 99352.
Erin S BakerPacific Northwest National Laboratory, Richland, WA 99352.
Samuel H PaynePacific Northwest National Laboratory, Richland, WA 99352.
Yehia M IbrahimPacific Northwest National Laboratory, Richland, WA 99352.
Matthew E MonroePacific Northwest National Laboratory, Richland, WA 99352.
Gordon W SlyszPacific Northwest National Laboratory, Richland, WA 99352.
Brian L LaMarchePacific Northwest National Laboratory, Richland, WA 99352.
Vladislav A PetyukPacific Northwest National Laboratory, Richland, WA 99352.
Paul D PiehowskiPacific Northwest National Laboratory, Richland, WA 99352.
William F DanielsonPacific Northwest National Laboratory, Richland, WA 99352.
Gordon A AndersonPacific Northwest National Laboratory, Richland, WA 99352.
Richard D SmithPacific Northwest National Laboratory, Richland, WA 99352.

Funding

WORKSHOP AND TRAINING ACTIVITIESP41RR018522 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2003 to 2011
$25.1M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
PNNL Clinical Proteome Characterization CenterU24CA160019 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI RODLAND, KARIN D, SMITH, RICHARD D · 2011 to 2016
$15.7M
Platform Providing Increased Throughput, Sensitivity and Specificity for MetaboloR01ES022190 · NIEHS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI BAKER, ERIN S · 2012 to 2016
$2.2M
A Proteomics Platform for Quantitative, Ultra-High Throughput, and Ultra-SensitivR21CA126191 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2006 to 2007
$296k
NCI NIH HHS R21 CA126191NCI NIH HHS U24 CA160019NCRR NIH HHS P41 RR018522NIEHS NIH HHS R01 ES022190NIGMS NIH HHS P41 GM103493
6 · The paper itself

Abstract

Ion mobility spectrometry in conjunction with liquid chromatography separations and mass spectrometry offers a range of new possibilities for analyzing complex biological samples. To fully utilize the information obtained from these three measurement dimensions, informatics tools based on the accurate mass and time tag methodology were modified to incorporate ion mobility spectrometry drift times for peptides observed in human serum. In this work a reference human serum database was created for 12,139 peptides and populated with the monoisotopic mass, liquid chromatography normalized elution time, and ion mobility spectrometry drift time(s) for each. We demonstrate that the use of three dimensions for peak matching during the peptide identification process resulted in an increased numbers of identifications and a lower false discovery rate relative to only using the mass and normalized elution time dimensions.

Indexed as

AMT tagdrift timefalse discovery rateion mobility spectrometryLC-IMS-MSLC-MSmass spectrometrypeptide identification

Identifiers

PMID25089116
PMCPMC4114398

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.