Evidence map›Paper›PMID 25088811›Full record

ArticleNature communications2014

Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline.

Violette Da Cunha, Mark R Davies, Pierre-Emmanuel Douarre, Isabelle Rosinski-Chupin, Immaculada Margarit, Sebastien Spinali, Tim Perkins, Pierre Lechat, Nicolas Dmytruk, Elisabeth Sauvage and 21 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 153 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed, 3 pooled it
19.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

153 citing papers in PubMed, 3 syntheses or guidelines pooled it, 245 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Article
  6. Review
  7. Review
  8. Comparative Genomic Analysis of Bovine and Publicly Available HumanAnimals : an open access journal from MDPI · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Virulence and resistance adaptation of Streptococcus agalactiae Ib/ST261 infecting bullfrogs in Hainan, China between 2019 and 2023.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026
    Article
  14. Article
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  16. Towards a holistic epidemiology ofFrontiers in bioinformatics · 2026
    Article
  17. Article
  18. Zoonotic Approach toInternational journal of microbiology · 2026
    Article
  19. Article
  20. Review

93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

31 authors at 15 institutions in 8 countries.

Violette Da Cunha *Institut Pasteur, Unité de Biologie des Bacteries Pathogènes à Gram-positif, Paris 75015, France.
Mark R Davies *The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 15A, UK.
Pierre-Emmanuel DouarreInstitut Pasteur, Unité de Biologie des Bacteries Pathogènes à Gram-positif, Paris 75015, France.
Isabelle Rosinski-ChupinInstitut Pasteur, Unité de Biologie des Bacteries Pathogènes à Gram-positif, Paris 75015, France.
Immaculada MargaritNovartis Vaccines and Diagnostics, Siena 53100, Italy.
Sebastien SpinaliCentre National de Référence des Streptocoques, Hôpitaux Universitaires, Paris Centre Cochin-Hôtel Dieu-Broca, Paris 75014, France.
Tim PerkinsNovartis Vaccines and Diagnostics, Siena 53100, Italy.
Pierre LechatInstitut Pasteur, Bioinformatics platform, Paris 75015, France.
Nicolas DmytrukCentre National de Référence des Streptocoques, Hôpitaux Universitaires, Paris Centre Cochin-Hôtel Dieu-Broca, Paris 75014, France.
Elisabeth SauvageInstitut Pasteur, Unité de Biologie des Bacteries Pathogènes à Gram-positif, Paris 75015, France.
Laurence MaInstitut Pasteur Genomic platform, Paris 75015, France.
Benedetta RomiNovartis Vaccines and Diagnostics, Siena 53100, Italy.
Magali TichitInstitut Pasteur Genomic platform, Paris 75015, France.
Maria-José Lopez-SanchezInstitut Pasteur, Unité de Biologie des Bacteries Pathogènes à Gram-positif, Paris 75015, France.
Stéphane Descorps-DeclereInstitut Pasteur, Bioinformatics platform, Paris 75015, France.
Erika SoucheInstitut Pasteur, Bioinformatics platform, Paris 75015, France.
Carmen BuchrieserCNRS UMR3525, Paris 75015, France.
Patrick Trieu-CuotInstitut Pasteur, Unité de Biologie des Bacteries Pathogènes à Gram-positif, Paris 75015, France.
Ivan MoszerInstitut Pasteur, Bioinformatics platform, Paris 75015, France.
Dominique ClermontInstitut Pasteur, Collection de l'Institut Pasteur (CIP), Paris 75015, France.
Domenico MaioneNovartis Vaccines and Diagnostics, Siena 53100, Italy.
Christiane BouchierInstitut Pasteur Genomic platform, Paris 75015, France.
David J McMillanQIMR Berghofer Medical Research Institute, Brisbane, 7006 Queensland, Australia.
Julian ParkhillThe Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 15A, UK.
John L TelfordNovartis Vaccines and Diagnostics, Siena 53100, Italy.
Gordan DouganThe Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 15A, UK.
Mark J WalkerAustralian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072 Queensland, Australia.
DEVANI Consortium
Matthew T G HoldenThe Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 15A, UK.
Claire PoyartInstitut Pasteur, Unité de Biologie des Bacteries Pathogènes à Gram-positif, Paris 75015, France.
Philippe GlaserInstitut Pasteur, Unité de Biologie des Bacteries Pathogènes à Gram-positif, Paris 75015, France.
Institut Pasteur · FRNovartis (Italy) · ITUniversity Medical Center Freiburg · DECentre National de la Recherche Scientifique · FRIstituto Superiore di Sanità · ITWellcome Sanger Institute · GBGroupe Hospitalier Cochin - Port-Royal, Hôtel-Dieu, Broca - La Collégiale · FRHospital Universitario Virgen de las Nieves · ESNational Center of Infectious and Parasitic Diseases · BGPublic Health England · GBUniversity of Queensland · AUInserm · FRNational Institute of Public Health · CZPoliclinico di Modena · ITQIMR Berghofer Medical Research Institute · AU

Funding

Wellcome Trust 079643Wellcome Trust 098051
6 · The paper itself

Abstract

Streptococcus agalactiae (Group B Streptococcus, GBS) is a commensal of the digestive and genitourinary tracts of humans that emerged as the leading cause of bacterial neonatal infections in Europe and North America during the 1960s. Due to the lack of epidemiological and genomic data, the reasons for this emergence are unknown. Here we show by comparative genome analysis and phylogenetic reconstruction of 229 isolates that the rise of human GBS infections corresponds to the selection and worldwide dissemination of only a few clones. The parallel expansion of the clones is preceded by the insertion of integrative and conjugative elements conferring tetracycline resistance (TcR). Thus, we propose that the use of tetracycline from 1948 onwards led in humans to the complete replacement of a diverse GBS population by only few TcR clones particularly well adapted to their host, causing the observed emergence of GBS diseases in neonates.

Indexed as

Genes, BacterialGenome, BacterialAnti-Bacterial AgentsBase SequenceClone CellsDNA Transposable ElementsEuropeHigh-Throughput Nucleotide SequencingHumansMolecular Sequence DataNorth AmericaPhylogenyPolymorphism, Single NucleotideSelection, GeneticStreptococcal InfectionsStreptococcus agalactiaeAnti-Bacterial AgentsDNA Transposable ElementsTetracycline

Identifiers

PMID25088811
PMCPMC4538795
OpenAlexW2077529382

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.