Evidence map›Paper›PMID 25088076›Full record

ArticleFungal biology2014

Functional characterization of a tyrosinase gene from the oomycete Saprolegnia parasitica by RNAi silencing.

Marcia Saraiva, Irene de Bruijn, Laura Grenville-Briggs, Debbie McLaggan, Ariane Willems, Vincent Bulone, Pieter van West

Open access · hybridAbstract read
In one paragraph

Article in Fungal biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Marcia SaraivaAberdeen Oomycete Laboratory, University of Aberdeen, Foresterhill, AB25 2ZD Aberdeen, UK.
Irene de BruijnAberdeen Oomycete Laboratory, University of Aberdeen, Foresterhill, AB25 2ZD Aberdeen, UK.
Laura Grenville-BriggsAberdeen Oomycete Laboratory, University of Aberdeen, Foresterhill, AB25 2ZD Aberdeen, UK; Division of Glycoscience, School of Biotechnology, KTH - Royal Institute of Technology, AlbaNova University Center, SE-106 91 Stockholm, Sweden.
Debbie McLagganAberdeen Oomycete Laboratory, University of Aberdeen, Foresterhill, AB25 2ZD Aberdeen, UK.
Ariane WillemsAberdeen Oomycete Laboratory, University of Aberdeen, Foresterhill, AB25 2ZD Aberdeen, UK.
Vincent BuloneDivision of Glycoscience, School of Biotechnology, KTH - Royal Institute of Technology, AlbaNova University Center, SE-106 91 Stockholm, Sweden.
Pieter van WestAberdeen Oomycete Laboratory, University of Aberdeen, Foresterhill, AB25 2ZD Aberdeen, UK. Electronic address: p.vanwest@abdn.ac.uk.
University of Aberdeen · GBAlbaNova · SE

Funding

Biotechnology and Biological Sciences Research Council BB/G012075/1
6 · The paper itself

Abstract

Here we describe the first application of transient gene silencing in Saprolegnia parasitica, a pathogenic oomycete that infects a wide range of fish, amphibians, and crustaceans. A gene encoding a putative tyrosinase from S. parasitica, SpTyr, was selected to investigate the suitability of RNA-interference (RNAi) to functionally characterize genes of this economically important pathogen. Tyrosinase is a mono-oxygenase enzyme that catalyses the O-hydroxylation of monophenols and subsequent oxidation of O-diphenols to quinines. These enzymes are widely distributed in nature, and are involved in the melanin biosynthesis. Gene silencing was obtained by delivering in vitro synthesized SpTyr dsRNA into protoplasts. Expression analysis, tyrosinase activity measurements, and melanin content analysis confirmed silencing in individual lines. Silencing of SpTyr resulted in a decrease of tyrosinase activity between 38 % and 60 %, dependent on the level of SpTyr-expression achieved. The SpTyr-silenced lines displayed less pigmentation in developing sporangia and occasionally an altered morphology. Moreover, developing sporangia from individual silenced lines possessed a less electron dense cell wall when compared to control lines, treated with GFP-dsRNA. In conclusion, the tyrosinase gene of S. parasitica is required for melanin formation and transient gene silencing can be used to functionally characterize genes in S. parasitica.

Indexed as

Gene SilencingCell WallGene Knockdown TechniquesMelaninsMicroscopy, ElectronMonophenol MonooxygenaseRNA, Small InterferingSaprolegniaSporangiaMelaninsMonophenol MonooxygenaseRNA, Small InterferingCell wallGene expressionMelaninOomyceteTransient transformation

Identifiers

PMID25088076
PMCPMC4152626
OpenAlexW2057061114

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.