Evidence map›Paper›PMID 25086916›Full record

ArticleBMC medical informatics and decision making2014

Multi-topic assignment for exploratory navigation of consumer health information in NetWellness using formal concept analysis.

Licong Cui, Rong Xu, Zhihui Luo, Susan Wentz, Kyle Scarberry, Guo-Qiang Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC medical informatics and decision making, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Web-based Interactive Visualization of Non-Lattice Subgraphs (WINS) in SNOMED CT.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2020
    Article
  2. SimQ: real-time retrieval of similar consumer health questions.Journal of medical Internet research · 2015
    Article
  3. COBE: A Conjunctive Ontology Browser and Explorer for Visualizing SNOMED CT Fragments.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2015
    Article
  4. A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Licong Cui
Rong Xu
Zhihui Luo
Susan Wentz
Kyle Scarberry
Guo-Qiang ZhangDepartment of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland OH 44106, USA. gq@case.edu.
Case Western Reserve University · USUniversity Hospitals Case Medical Center · US

Funding

Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
NCATS NIH HHS UL1 TR000439NCATS NIH HHS UL1TR000439
6 · The paper itself

Abstract

backgroundFinding quality consumer health information online can effectively bring important public health benefits to the general population. It can empower people with timely and current knowledge for managing their health and promoting wellbeing. Despite a popular belief that search engines such as Google can solve all information access problems, recent studies show that using search engines and simple search terms is not sufficient. Our objective is to provide an approach to organizing consumer health information for navigational exploration, complementing keyword-based direct search. Multi-topic assignment to health information, such as online questions, is a fundamental step for navigational exploration.

methodsWe introduce a new multi-topic assignment method combining semantic annotation using UMLS concepts (CUIs) and Formal Concept Analysis (FCA). Each question was tagged with CUIs identified by MetaMap. The CUIs were filtered with term-frequency and a new term-strength index to construct a CUI-question context. The CUI-question context and a topic-subject context were used for multi-topic assignment, resulting in a topic-question context. The topic-question context was then directly used for constructing a prototype navigational exploration interface.

resultsExperimental evaluation was performed on the task of automatic multi-topic assignment of 99 predefined topics for about 60,000 consumer health questions from NetWellness. Using example-based metrics, suitable for multi-topic assignment problems, our method achieved a precision of 0.849, recall of 0.774, and F₁ measure of 0.782, using a reference standard of 278 questions with manually assigned topics. Compared to NetWellness' original topic assignment, a 36.5% increase in recall is achieved with virtually no sacrifice in precision.

conclusionEnhancing the recall of multi-topic assignment without sacrificing precision is a prerequisite for achieving the benefits of navigational exploration. Our new multi-topic assignment method, combining term-strength, FCA, and information retrieval techniques, significantly improved recall and performed well according to example-based metrics.

Indexed as

Consumer Health InformationMedical Informatics ApplicationsUser-Computer InterfaceHumansInformation Storage and Retrieval

Identifiers

PMID25086916
PMCPMC4131492
OpenAlexW2100831284

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.