Evidence map›Paper›PMID 25086572›Full record

ArticleMarine biotechnology (New York, N.Y.)2014

Identification of proteins associated with adhesive prints from Holothuria dofleinii Cuvierian tubules.

Yong Y Peng, Veronica Glattauer, Timothy D Skewes, Andrew McDevitt, Christopher M Elvin, Jerome A Werkmeister, Lloyd D Graham, John A M Ramshaw

Abstract read
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In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. In Silico Analysis of Pacific Oyster (International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Yong Y PengCSIRO Materials Science and Engineering, Bayview Avenue, Clayton, VIC, 3169, Australia.
Veronica Glattauer
Timothy D Skewes
Andrew McDevitt
Christopher M Elvin
Jerome A Werkmeister
Lloyd D Graham
John A M Ramshaw
Commonwealth Scientific and Industrial Research Organisation · AUAnimal, Food and Health Sciences · AUCSIRO Manufacturing · AUCSIRO Oceans and Atmosphere · AUMaterials Science & Engineering · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cuvierian tubules are expelled as a defence mechanism against predators by various species within the family Holothuridae. When the tubules are expelled, they become sticky almost immediately and ensnare the predator. The mechanism of this rapid adhesion is not clear, but proteins on the surface of the expelled tubules are widely believed to be involved. This study has examined such proteins from Holothuria dofleinii, sourced from adhesive prints left on glass after the removal of adhered tubules. Gel electrophoresis showed that seven strongly staining protein bands were consistently present in all samples, with molecular masses ranging from 89 to 17 kDa. N-terminal sequence data was obtained from two bands, while others seemed blocked. Tandem mass spectrometry-based sequencing of tryptic peptides derived from individual protein bands indicated that the proteins were unlikely to be homopolymers. PCR primers designed using the peptide sequences enabled us to amplify, clone and sequence cDNA segments relating to four gel bands; for each, the predicted translation product contained other peptide sequences observed for that band that had not been used in primer design. Database searches using the peptide and cDNA-encoded sequences suggest that two of the seven proteins are novel and one is a C-type lectin, while-surprisingly-at least three of the other four are closely related to enzymes associated with the pentose phosphate cycle and glycolysis. We discuss precedents in which lectins and metabolic enzymes are involved in attachment and adhesion phenomena.

Indexed as

AdhesivesAnimalsBase SequenceBlotting, WesternCloning, MolecularComputational BiologyElectrophoresis, Polyacrylamide GelHolothuriaMolecular Sequence DataProteinsQueenslandSequence Analysis, DNATandem Mass SpectrometryAdhesivesProteins

Identifiers

PMID25086572
OpenAlexW2028540314

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.