ArticleNature methods2014
Epiviz: interactive visual analytics for functional genomics data.
Article in Nature methods, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed.
- Plotgardener App: a graphical interface for publication-ready genomic visualization.Bioinformatics (Oxford, England) · 2026Article
- Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.Bioinformatics (Oxford, England) · 2023Article
- The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain.Nucleic acids research · 2023Article
- Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.IEEE transactions on visualization and computer graphics · 2022Article
- gEAR: Gene Expression Analysis Resource portal for community-driven, multi-omic data exploration.Nature methods · 2021Article
- A Compendium of Bioinformatic Tools for Bacterial Pangenomics to Be Used by Wet-Lab Scientists.Methods in molecular biology (Clifton, N.J.) · 2021Review
- Epiviz File Server: Query, transform and interactively explore data from indexed genomic files.Bioinformatics (Oxford, England) · 2020Article
- Proactive visual and statistical analysis of genomic data in Epiviz.Bioinformatics (Oxford, England) · 2020Article
- Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz.F1000Research · 2020Article
- Tasks, Techniques, and Tools for Genomic Data Visualization.Computer graphics forum : journal of the European Association for Computer Graphics · 2019Article
- Visual Analytics of Genomic and Cancer Data: A Systematic Review.Cancer informatics · 2019Review
- Article
- Enhanced JBrowse plugins for epigenomics data visualization.BMC bioinformatics · 2018Article
- Metaviz: interactive statistical and visual analysis of metagenomic data.Nucleic acids research · 2018Article
- Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets.F1000Research · 2018Article
- Panoptes: web-based exploration of large scale genome variation data.Bioinformatics (Oxford, England) · 2017Article
- C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search.BMC bioinformatics · 2017Article
- Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning.Bioinformatics (Oxford, England) · 2017Article
- ChAsE: chromatin analysis and exploration tool.Bioinformatics (Oxford, England) · 2016Article
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.Nucleic acids research · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
Abstract
Visualization is an integral aspect of genomics data analysis. Algorithmic-statistical analysis and interactive visualization are most effective when used iteratively. Epiviz (http://epiviz.cbcb.umd.edu/), a web-based genome browser, and the Epivizr Bioconductor package allow interactive, extensible and reproducible visualization within a state-of-the-art data-analysis platform.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.