Evidence map›Paper›PMID 25085494›Full record

ArticleApplied and environmental microbiology2014

Genomic insights into the evolutionary origin of Xanthomonas axonopodis pv. citri and its ecological relatives.

Samriti Midha, Prabhu B Patil

Open access · hybridAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Pathogens (Basel, Switzerland) · 2026
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  7. Antibacterial Activity of Copper Nanoparticles againstInternational journal of molecular sciences · 2022
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  8. Pest categorisation ofEFSA journal. European Food Safety Authority · 2021
    Article
  9. Review
  10. TheMicroorganisms · 2021
    Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Frontiers in plant science · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Samriti MidhaCSIR-Institute of Microbial Technology, Chandigarh, India.
Prabhu B PatilCSIR-Institute of Microbial Technology, Chandigarh, India pbpatil@imtech.res.in.
Institute of Microbial Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xanthomonas axonopodis pv. citri (Xac) is the causal agent of citrus bacterial canker (CBC) and is a serious problem worldwide. Like CBC, several important diseases in other fruits, such as mango, pomegranate, and grape, are also caused by Xanthomonas pathovars that display remarkable specificity toward their hosts. While citrus and mango diseases were documented more than 100 years ago, the pomegranate and grape diseases have been known only since the 1950s and 1970s, respectively. Interestingly, diseases caused by all these pathovars were noted first in India. Our genome-based phylogenetic studies suggest that these diverse pathogens belong to a single species and these pathovars may be just a group of rapidly evolving strains. Furthermore, the recently reported pathovars, such as those infecting grape and pomegranate, form independent clonal lineages, while the citrus and mango pathovars that have been known for a long time form one clonal lineage. Such an understanding of their phylogenomic relationship has further allowed us to understand major and unique variations in the lineages that give rise to these pathovars. Whole-genome sequencing studies including ecological relatives from their putative country of origin has allowed us to understand the evolutionary history of Xac and other pathovars that infect fruits.

Indexed as

Biological EvolutionAnisolesClustered Regularly Interspaced Short Palindromic RepeatsGenes, BacterialGenetic VariationGenome, BacterialIntegronsLipopolysaccharidesLythraceaeMangiferaMolecular Sequence DataPhylogenyPlant DiseasesVitisXanthomonas axonopodisAnisolesLipopolysaccharidesxanthomonadin I

Identifiers

PMID25085494
PMCPMC4178650
OpenAlexW2034271565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.