Evidence map›Paper›PMID 25085485›Full record

ArticleApplied and environmental microbiology2014

Functional and phylogenetic divergence of fungal adenylate-forming reductases.

Daniel Kalb, Gerald Lackner, Dirk Hoffmeister

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Characterization of a NRPS-like Protein fromJournal of fungi (Basel, Switzerland) · 2022
    Article
  4. Bacillus sp.: A Remarkable Source of Bioactive Lipopeptides.Advances in biochemical engineering/biotechnology · 2022
    Article
  5. Molecular Evolution of Lysine Biosynthesis in Agaricomycetes.Journal of fungi (Basel, Switzerland) · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Recent advances in biocatalytic derivatization of L-tyrosine.Applied microbiology and biotechnology · 2020
    Review
  11. Article
  12. Review
  13. Article
  14. Biocatalytic portfolio of Basidiomycota.Current opinion in chemical biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Daniel KalbFriedrich-Schiller-Universität Jena, Department Pharmaceutical Microbiology at the Hans-Knöll-Institute, Jena, Germany.
Gerald LacknerFriedrich-Schiller-Universität Jena, Department Pharmaceutical Microbiology at the Hans-Knöll-Institute, Jena, Germany.
Dirk HoffmeisterFriedrich-Schiller-Universität Jena, Department Pharmaceutical Microbiology at the Hans-Knöll-Institute, Jena, Germany dirk.hoffmeister@hki-jena.de.
Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A key step in fungal L-lysine biosynthesis is catalyzed by adenylate-forming L-α-aminoadipic acid reductases, organized in domains for adenylation, thiolation, and the reduction step. However, the genomes of numerous ascomycetes and basidiomycetes contain an unexpectedly large number of additional genes encoding similar but functionally distinct enzymes. Here, we describe the functional in vitro characterization of four reductases which were heterologously produced in Escherichia coli. The Ceriporiopsis subvermispora serine reductase Nps1 features a terminal ferredoxin-NADP+ reductase (FNR) domain and thus belongs to a hitherto undescribed class of fungal multidomain enzymes. The second major class is characterized by the canonical terminal short-chain dehydrogenase/reductase domain and represented by Ceriporiopsis subvermispora Nps3 as the first biochemically characterized L-α-aminoadipic acid reductase of basidiomycete origin. Aspergillus flavus l-tyrosine reductases LnaA and LnbA are members of a distinct phylogenetic clade. Phylogenetic analysis supports the view that fungal adenylate-forming reductases are more diverse than previously recognized and belong to four distinct classes.

Indexed as

Aspergillus flavusCoriolaceaeEscherichia coliFatty Acid SynthasesFerredoxin-NADP ReductaseFungal ProteinsL-Aminoadipate-Semialdehyde DehydrogenaseLysineNADH, NADPH OxidoreductasesPhylogenyProtein DomainsTyrosineFatty Acid SynthasesFerredoxin-NADP ReductaseFungal ProteinsL-Aminoadipate-Semialdehyde DehydrogenaseLysineNADH, NADPH Oxidoreductasesshort chain trans-2-enoyl-CoA reductaseTyrosine

Identifiers

PMID25085485
PMCPMC4178688
OpenAlexW2162776587

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.