Evidence map›Paper›PMID 25085266›Full record

ArticleHuman genetics2014

Common vitamin D pathway gene variants reveal contrasting effects on serum vitamin D levels in African Americans and European Americans.

Ken Batai, Adam B Murphy, Ebony Shah, Maria Ruden, Jennifer Newsome, Sara Agate, Michael A Dixon, Hua Yun Chen, Leslie A Deane, Courtney M P Hollowell and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Human genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 5 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 5 syntheses or guidelines pooled it, 77 citations in OpenAlex.

  1. Pooled it
  2. The effect of pregnancy vitamin D supplementation on offspring bone mineral density in childhood: a systematic review and meta-analysis.Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA · 2023
    Pooled it
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  6. Early High-Dose Vitamin DThe New England journal of medicine · 2019
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  7. Association of free vitamin DAnnals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology · 2018
    Trial
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 1 country.

Ken BataiDivision of Urology, Department of Surgery, University of Arizona College of Medicine, University of Arizona Cancer Center, P.O. Box 245024, 1515 N. Campbell Ave., Tucson, AZ, 85724, USA, kbatai@email.arizona.edu.
Adam B Murphy
Ebony Shah
Maria Ruden
Jennifer Newsome
Sara Agate
Michael A Dixon
Hua Yun Chen
Leslie A Deane
Courtney M P Hollowell
Chiledum Ahaghotu
Rick A Kittles
University of Illinois Chicago · USUniversity of Arizona · USCook County Health and Hospitals System · USHoward University · USJesse Brown VA Medical Center · USNorthwestern University · USRush University · USUniversity of Arizona Cancer Center

Funding

UIC CANCER PREVENTION &CONTROL RESEARCH TRAINING GRANTR25CA057699 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI FITZGIBBON, MARIAN L. · 1992 to 2017
$8.2M
Biological and Environmental modifiers of Vitamin D3 and Prostate Cancer RiskR01MD007105 · NIMHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KITTLES, RICK A. · 2012 to 2016
$2.0M
CSRD VA IK2 CX000926NCI NIH HHS 5R25 CA057699NCI NIH HHS R25 CA057699NIMHD NIH HHS 1R01MD007105-01NIMHD NIH HHS R01 MD007105
6 · The paper itself

Abstract

Vitamin D deficiency is more common among African Americans (AAs) than among European Americans (EAs), and epidemiologic evidence links vitamin D status to many health outcomes. Two genome-wide association studies (GWAS) in European populations identified vitamin D pathway gene single-nucleotide polymorphisms (SNPs) associated with serum vitamin D [25(OH)D] levels, but a few of these SNPs have been replicated in AAs. Here, we investigated the associations of 39 SNPs in vitamin D pathway genes, including 19 GWAS-identified SNPs, with serum 25(OH)D concentrations in 652 AAs and 405 EAs. Linear and logistic regression analyses were performed adjusting for relevant environmental and biological factors. The pattern of SNP associations was distinct between AAs and EAs. In AAs, six GWAS-identified SNPs in GC, CYP2R1, and DHCR7/NADSYN1 were replicated, while nine GWAS SNPs in GC and CYP2R1 were replicated in EAs. A CYP2R1 SNP, rs12794714, exhibited the strongest signal of association in AAs. In EAs, however, a different CYP2R1 SNP, rs1993116, was the most strongly associated. Our models, which take into account genetic and environmental variables, accounted for 20 and 28 % of the variance in serum vitamin D levels in AAs and EAs, respectively.

Indexed as

Polymorphism, Single NucleotideBlack or African AmericanFemaleGenome-Wide Association StudyHumansLinkage DisequilibriumMaleRegression AnalysisVitamin DVitamin D DeficiencyWhite People25-hydroxyvitamin DVitamin D

Identifiers

PMID25085266
PMCPMC4185105
OpenAlexW2005208296

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.