ArticleGenome biology and evolution2014
Remarkable diversity of endogenous viruses in a crustacean genome.
Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 58 citations in OpenAlex.
- Statistical Distributions of Genome Assemblies Reveal Random Effects in Ancient Viral DNA Reconstructions.Viruses · 2025Article
- Integrase-associated niche differentiation of endogenous large DNA viruses in crustaceans.Microbiology spectrum · 2024Article
- Comparative Analysis of Transposable Elements Reveals the Diversity of Transposable Elements in Decapoda and Their Effects on Genomic Evolution.Marine biotechnology (New York, N.Y.) · 2023Article
- Co-option of a non-retroviral endogenous viral element in planthoppers.Nature communications · 2023Article
- Nudivirus Remnants in the Genomes of Arthropods.Genome biology and evolution · 2020Article
- The Complete Genome of an Endogenous Nimavirus (Genes · 2020Article
- Evolution and phylogeography ofVirus evolution · 2019Article
- The complete genome sequence of CrRV-Ch01, a new member of the family Rhabdoviridae in the parasitic copepod Caligus rogercresseyi present on farmed Atlantic salmon (Salmo salar) in Chile.Archives of virology · 2018Article
- LinearPeerJ · 2018Article
- Potential Role of Accessory Domains in Polyproteins Encoded by Retrotransposons in Anti-viral Defense of Host Cells.Frontiers in microbiology · 2018Article
- HTT-DB: new features and updates.Database : the journal of biological databases and curation · 2018Article
- Review
- Variation in virome diversity in wild populations ofVirusdisease · 2017Article
- Parasites, pathogens and commensals in the "low-impact" non-native amphipod host Gammarus roeselii.Parasites & vectors · 2017Article
- Article
- Birth of a W sex chromosome by horizontal transfer of Wolbachia bacterial symbiont genome.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- Discovery of parvovirus-related sequences in an unexpected broad range of animals.Scientific reports · 2016Article
- The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal-Microbe Interactions of Ecological Relevance.Frontiers in microbiology · 2016Review
- Characterization of fossilized relatives of the White Spot Syndrome Virus in genomes of decapod crustaceans.BMC evolutionary biology · 2015Article
- Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups.Mobile DNA · 2015Article
Corrections and comments
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Authors and funding
5 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent studies in paleovirology have uncovered myriads of endogenous viral elements (EVEs) integrated in the genome of their eukaryotic hosts. These fragments result from endogenization, that is, integration of the viral genome into the host germline genome followed by vertical inheritance. So far, most studies have used a virus-centered approach, whereby endogenous copies of a particular group of viruses were searched in all available sequenced genomes. Here, we follow a host-centered approach whereby the genome of a given species is comprehensively screened for the presence of EVEs using all available complete viral genomes as queries. Our analyses revealed that 54 EVEs corresponding to 10 different viral lineages belonging to 5 viral families (Bunyaviridae, Circoviridae, Parvoviridae, and Totiviridae) and one viral order (Mononegavirales) became endogenized in the genome of the isopod crustacean Armadillidium vulgare. We show that viral endogenization occurred recurrently during the evolution of isopods and that A. vulgare viral lineages were involved in multiple host switches that took place between widely divergent taxa. Furthermore, 30 A. vulgare EVEs have uninterrupted open reading frames, suggesting they result from recent endogenization of viruses likely to be currently infecting isopod populations. Overall, our work shows that isopods have been and are still infected by a large variety of viruses. It also extends the host range of several families of viruses and brings new insights into their evolution. More generally, our results underline the power of paleovirology in characterizing the viral diversity currently infecting eukaryotic taxa.
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