Evidence map›Paper›PMID 25084331›Full record

ArticleActa crystallographica. Section D, Biological crystallography2014

Improved reproducibility of unit-cell parameters in macromolecular cryocrystallography by limiting dehydration during crystal mounting.

Christopher Farley, Geoffry Burks, Thomas Siegert, Douglas H Juers

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Automated gradient equilibration of macromolecular crystals to new solution conditions.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  2. Article
  3. Journal of applied crystallography · 2024
    Article
  4. MatchMaps: Non-isomorphous difference maps for X-ray crystallography.bioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. High-throughput in situ experimental phasing.Acta crystallographica. Section D, Structural biology · 2020
    Article
  9. Article
  10. Structural characterization of a prolyl aminodipeptidase (PepX) from Lactobacillus helveticus.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. A standardized technique for high-pressure cooling of protein crystals.Acta crystallographica. Section D, Structural biology · 2017
    Article
  17. Article
  18. A generic protocol for protein crystal dehydration using the HC1b humidity controller.Acta crystallographica. Section D, Structural biology · 2016
    Article
  19. Crystal Dehydration in Membrane Protein Crystallography.Advances in experimental medicine and biology · 2016
    Article
  20. Crystallographic phasing from weak anomalous signals.Current opinion in structural biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Christopher FarleyDepartment of Physics, Whitman College, 345 Boyer Avenue, Walla Walla, WA 99362, USA.
Geoffry BurksProgram in Biochemistry, Biophysics and Molecular Biology, Whitman College, 345 Boyer Avenue, Walla Walla, WA 99362, USA.
Thomas SiegertProgram in Biochemistry, Biophysics and Molecular Biology, Whitman College, 345 Boyer Avenue, Walla Walla, WA 99362, USA.
Douglas H JuersDepartment of Physics, Whitman College, 345 Boyer Avenue, Walla Walla, WA 99362, USA.

Funding

New Predictive Methods for Cryoprotection in Macromolecular CrystallographyR15GM090248 · NIGMS · WHITMAN COLLEGE · PI JUERS, DOUGLAS HENRY · 2010 to 2025
$923k
NIGMS NIH HHS GM090248NIGMS NIH HHS R15 GM090248
6 · The paper itself

Abstract

In macromolecular cryocrystallography unit-cell parameters can have low reproducibility, limiting the effectiveness of combining data sets from multiple crystals and inhibiting the development of defined repeatable cooling protocols. Here, potential sources of unit-cell variation are investigated and crystal dehydration during loop-mounting is found to be an important factor. The amount of water lost by the unit cell depends on the crystal size, the loop size, the ambient relative humidity and the transfer distance to the cooling medium. To limit water loss during crystal mounting, a threefold strategy has been implemented. Firstly, crystal manipulations are performed in a humid environment similar to the humidity of the crystal-growth or soaking solution. Secondly, the looped crystal is transferred to a vial containing a small amount of the crystal soaking solution. Upon loop transfer, the vial is sealed, which allows transport of the crystal at its equilibrated humidity. Thirdly, the crystal loop is directly mounted from the vial into the cold gas stream. This strategy minimizes the exposure of the crystal to relatively low humidity ambient air, improves the reproducibility of low-temperature unit-cell parameters and offers some new approaches to crystal handling and cryoprotection.

Indexed as

CrystallographyReproducibility of Resultscryocoolingdehydrationhumidityunit-cell reproducibility

Identifiers

PMID25084331
PMCPMC4118824

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.