Evidence map›Paper›PMID 25084326›Full record

ArticleActa crystallographica. Section D, Biological crystallography2014

A conformational landscape for alginate secretion across the outer membrane of Pseudomonas aeruginosa.

Jingquan Tan, Sarah L Rouse, Dianfan Li, Valerie E Pye, Lutz Vogeley, Alette R Brinth, Toufic El Arnaout, John C Whitney, P Lynne Howell, Mark S P Sansom and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 51 citations in OpenAlex.

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  11. TheThe Journal of biological chemistry · 2020
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Jingquan TanSchools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Sarah L RouseDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, England.
Dianfan LiSchools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Valerie E PyeSchools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Lutz VogeleySchools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Alette R BrinthSchools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Toufic El ArnaoutSchools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
John C WhitneyProgram in Molecular Structure and Function, The Hospital for Sick Children, Toronto, Ontario, Canada.
P Lynne HowellProgram in Molecular Structure and Function, The Hospital for Sick Children, Toronto, Ontario, Canada.
Mark S P SansomDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, England.
Martin CaffreySchools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Trinity College Dublin · IEUniversity of Oxford · GBHospital for Sick Children · CAUniversity of Toronto · CA

Funding

Yeast ExpressionP50GM073210 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2004 to 2013
$21.5M
Center for the Rational Design of Membrane Protein CrystallographyU54GM094599 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2014
$6.8M
Biotechnology and Biological Sciences Research Council B19456Biotechnology and Biological Sciences Research Council BB/H000267/1Biotechnology and Biological Sciences Research Council BB/I019855/1Biotechnology and Biological Sciences Research Council BB/L002558/1Biotechnology and Biological Sciences Research Council BBS/B/16011Biotechnology and Biological Sciences Research Council BEP17032CIHR 13337NIGMS NIH HHS P50 GM073210NIGMS NIH HHS P50GM073210NIGMS NIH HHS U54 GM094599NIGMS NIH HHS U54GM094599Wellcome Trust
6 · The paper itself

Abstract

The exopolysaccharide alginate is an important component of biofilms produced by Pseudomonas aeruginosa, a major pathogen that contributes to the demise of cystic fibrosis patients. Alginate exits the cell via the outer membrane porin AlgE. X-ray structures of several AlgE crystal forms are reported here. Whilst all share a common β-barrel constitution, they differ in the degree to which loops L2 and T8 are ordered. L2 and T8 have been identified as an extracellular gate (E-gate) and a periplasmic gate (P-gate), respectively, that reside on either side of an alginate-selectivity pore located midway through AlgE. Passage of alginate across the membrane is proposed to be regulated by the sequential opening and closing of the two gates. In one crystal form, the selectivity pore contains a bound citrate. Because citrate mimics the uronate monomers of alginate, its location is taken to highlight a route through AlgE taken by alginate as it crosses the pore. Docking and molecular-dynamics simulations support and extend the proposed transport mechanism. Specifically, the P-gate and E-gate are flexible and move between open and closed states. Citrate can leave the selectivity pore bidirectionally. Alginate docks stably in a linear conformation through the open pore. To translate across the pore, a force is required that presumably is provided by the alginate-synthesis machinery. Accessing the open pore is facilitated by complex formation between AlgE and the periplasmic protein AlgK. Alginate can thread through a continuous pore in the complex, suggesting that AlgK pre-orients newly synthesized exopolysaccharide for delivery to AlgE.

Indexed as

AlginatesBase SequenceCell MembraneCrystallography, X-RayDNA PrimersGlucuronic AcidHexuronic AcidsMolecular Dynamics SimulationProtein ConformationPseudomonas aeruginosaAlginatesDNA PrimersGlucuronic AcidHexuronic Acidsalginate secretionbiofilmlipidic cubic phasemembrane proteinmolecular-dynamics simulationporin

Identifiers

PMID25084326
PMCPMC4118822
OpenAlexW2125515856

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.