Evidence map›Paper›PMID 25084116›Full record

ArticlePloS one2014

Characterization of microbiota composition and presence of selected antibiotic resistance genes in carriage water of ornamental fish.

Lenka Gerzova, Petra Videnska, Marcela Faldynova, Karel Sedlar, Ivo Provaznik, Alois Cizek, Ivan Rychlik

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Detection of Extended-SpectrumBioMed research international · 2020
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  10. 16S rRNA-Based metagenomic analysis of microbial communities associated with wildBiotechnology reports (Amsterdam, Netherlands) · 2019
    Article
  11. Article
  12. Screening Foodstuffs for Class 1 Integrons and Gene Cassettes.Journal of visualized experiments : JoVE · 2015
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Lenka GerzovaVeterinary Research Institute, Brno, Czech Republic.
Petra VidenskaVeterinary Research Institute, Brno, Czech Republic.
Marcela FaldynovaVeterinary Research Institute, Brno, Czech Republic.
Karel SedlarDepartment of Biomedical Engineering, Brno University of Technology, Brno, Czech Republic.
Ivo ProvaznikDepartment of Biomedical Engineering, Brno University of Technology, Brno, Czech Republic.
Alois CizekUniversity of Veterinary and Pharmaceutical Sciences, Brno, Czech Republic.
Ivan RychlikVeterinary Research Institute, Brno, Czech Republic.
Veterinary Research Institute · CZBrno University of Technology · CZUniversity of Veterinary Sciences Brno · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

International trade with ornamental fish is gradually recognized as an important source of a wide range of different antibiotic resistant bacteria. In this study we therefore characterized the prevalence of selected antibiotic resistance genes in the microbiota found in the carriage water of ornamental fish originating from 3 different continents. Real-time PCR quantification showed that the sul1 gene was present in 11 out of 100 bacteria. tet(A) was present in 6 out of 100 bacteria and strA, tet(G), sul2 and aadA were present in 1-2 copies per 100 bacteria. Class I integrons were quite common in carriage water microbiota, however, pyrosequencing showed that only 12 different antibiotic gene cassettes were present in class I integrons. The microbiota characterized by pyrosequencing of the V3/V4 variable region of 16S rRNA genes consisted of Proteobacteria (48%), Bacteroidetes (29.5%), Firmicutes (17.8%), Actinobacteria (2.1%) and Fusobacteria (1.6%). Correlation analysis between antibiotic resistance gene prevalence and microbiota composition verified by bacterial culture showed that major reservoirs of sul1 sul2, tet(A), tet(B) tet(G), cat, cml, bla, strA, aacA, aph and aadA could be found among Alpha-, Beta- and Gammaproteobacteria with representatives of Enterobacteriaceae, Pseudomonadaceae, Rhizobiaceae and Comamonadaceae being those most positively associated with the tested antibiotic resistance genes.

Indexed as

ActinobacteriaAnimalsAnti-Bacterial AgentsBacteriaBacteroidetesDrug Resistance, Multiple, BacterialFishesFusobacteriaIntegronsMicrobiotaProteobacteriaReal-Time Polymerase Chain ReactionRNA, Ribosomal, 16SWater MicrobiologyAnti-Bacterial AgentsRNA, Ribosomal, 16S

Identifiers

PMID25084116
PMCPMC4118911
OpenAlexW2009893506

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.